Shewanella inventionis: K8B83_02925
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Entry
K8B83_02925 CDS
T07895
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sinv
Shewanella inventionis
Pathway
sinv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sinv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K8B83_02925 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sinv03021
]
K8B83_02925 (rpoC)
03400 DNA repair and recombination proteins [BR:
sinv03400
]
K8B83_02925 (rpoC)
Enzymes [BR:
sinv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K8B83_02925 (rpoC)
Transcription machinery [BR:
sinv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K8B83_02925 (rpoC)
DNA repair and recombination proteins [BR:
sinv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K8B83_02925 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
DUF2267
Motif
Other DBs
NCBI-ProteinID:
UAL43848
LinkDB
All DBs
Position
628147..632373
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTTLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLELLRAINLEEQIEQMREELPSINSETRRKKVTKRLKLMEAFFTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREQAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMAFSSVAEVEKAYATG
AAELHARVKVRITETTIADDGERTKATRIVDTTVGRALLSLILPEGLSYDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRFATISGASVGIDDMVIPAEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSSETVINRDGVEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGVEHGLTMKPLIEGGDVVEPLRERVL
GRVVAVDVLKPGTEEVLAPRNTLLDEAWCNTLEEHSIDEVIVRSVITCETDFGVCAACYG
RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNAGSLKL
HNAKHVSNIDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEDSEVAAGEIIANW
DPHTHPIISEVAGSVKFVDMIDGVTMTRQTDELTGLSSVVVLEIGARTSAGKELRPAIRL
VDADGNDLMIPGTEVPAQYFLPGNAIVSKDDNAKINVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGEHYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCLITSAGDSEFLEGEQVEVSRVKIANRELIAQGKAPATYERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDPLRGLKENVIVGRLIPAGTGYAYHKTRNEERAKSANSK
GNVEVATVTASEAEQNLADLLNLAGSQD
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttcttaaacagcaaagtaagactgaagaatttaacggaatt
aaaattggtttggcttcgccagatctcatccgttcttggtcttttggtgaagtaaagaag
ccagaaaccattaactaccgtacattcaagcctgagcgtgaaggtttgttctgtgcgcgt
atctttggtccggttaaagattacgaatgtttgtgtggtaaatacaaacgtcttaagcac
cgtggtgtgatttgtgaaaagtgtggcgtagaagttacccagactaaagtgcgtcgtgag
cgcatgggtcacattgaattggctagcccagttgcccacatttggttcttaaaatcactt
ccgtcacgtatcggcttaatgcttgatatgacgttgcgtgatattgaacgcgtactgtat
ttcgaatcatttgttgttattgagcctggcatgaccacgcttgagcgcggccaaatgctt
accgaagaaacgtatcttgatgcgttagaagaatacggtgacgagtttgaagctaagatg
ggtgcagaagcagttttagaattgctacgtgctatcaacttagaagaacagatcgaacaa
atgcgcgaagagttgccatcaatcaactcagaaacccgtcgtaaaaaggtgacaaaacgc
cttaagctgatggaagcattcttcacatctggtaacaaaccagagtggatgatcttaaaa
gtattaccggttctaccacctgatctacgtccattagtgccgttagatggtggtcgtttc
gcgacgtcagatcttaacgatctataccgccgcgtaattaaccgtaacaaccgtttgaag
cgtctgttagatctagctgcgcctgacattatcgtacgtaacgaaaagcgtatgttacaa
gagtcagttgatgcgctattagataacggtcgccgcggtcgtgctattaccggttctaac
aagcgtccgcttaaatctcttgctgatatgatcaagggtaagcaaggtcgtttccgtcag
aacttactaggtaagcgtgttgactattcaggtcgttcggtaattaccgtaggtcctact
ttacgtctgcatcagtgtggtcttcctaagaagatggcacttgagctattcaaaccattc
atctatggcaagttagaaggtcgtggcttagctacaactattaaagctgctaaaaagatg
gttgaacgcgaacaggctgaagtatgggatgtattagacgaagtgattcgtgaacatcct
gtgatgcttaaccgtgcaccaacacttcacagactaggtattcaagcatttgaacctgtt
ctgattgaaggtaaagcaattcaattgcatccgttagtttgtgcggcatataacgccgac
ttcgacggtgaccaaatggcggttcacgtaccattaacgcttgaagctcagttagaagct
cgtgcgttgatgatgtcaaccaacaacattctgtcaccagctaacggtgagcctgtaatt
acaccgtctcaagacgttgtattaggtttatactacaccagccgtgagcgtattaatggc
cgtggtgaaggtatggctttctcttcagttgctgaagtagaaaaagcatatgctactggt
gcagctgagctacatgctcgcgttaaagtacgtattactgagaccacaattgctgatgac
ggtgaaagaactaaagccacacgtatcgtagatacgactgttggtcgtgcgcttttatcg
ttaattctgccagaaggcttatcatatgatttggttaaccaaaacatgggtaagaagcag
atctctaagctattgaacacctgttatcgtcaactaggtcttaaagataccgttatcttt
gctgaccaattgatgtataccggtttccgttttgcgaccatctcaggtgcctctgttggt
attgacgatatggttatcccagctgagaaatacaccttagttgccgacgcagaagctgaa
gtacttgaaattcaagagcagttccagtcaggtcttgttaccgctggtgagcgttacaac
aaagttatcgatatctgggcatctgctaacgaaaaagtttctaaagcaatgatggaaaac
ctgtcatctgagacagtgattaaccgtgacggcgttgaagagaaacaagcatcgtttaac
agcatctatatgatggctgactcgggcgctcgtggtagtgctgcacagatccgtcagctt
gcgggtatgcgtggtctgatggctaagcctgacggctcaatcatcgaaaccccaattgtg
gctaacttccgtgaaggcctaaacgtactccagtactttatttctactcacggtgcgcgt
aaaggtcttgccgataccgcattgaagacagcaaactcgggttacctaacacgtcgtcta
gtagacgttgcacaagacttagttgttattgaagacgactgtggtgttgagcatggtcta
acaatgaaaccgctgattgaaggtggtgatgttgttgagccgttacgtgaacgcgttcta
ggtcgagttgttgccgtagacgtattgaaaccaggcacagaagaagtacttgcaccacgc
aacacacttcttgatgaagcatggtgtaatacgctagaagagcacagcatcgatgaagtg
attgtacgttctgtaattacctgtgaaacagacttcggtgtgtgtgcagcatgttacggc
cgtgacttggctcgtggtcatattattaaccacggtgaagcgattggtgttgtggcagca
cagtcaattggtgaaccaggtacacagttaaccatgcgtacgttccacattggtggtgcg
gcatcgagagcttctgcagaaaacaacgttcaagttaagaacgcgggttctctgaagcta
cacaatgctaagcatgtttctaacatcgacggtaaactcgttatcgtgtctcgttcttct
gagttagccatcatcgatgagctaggtcgtgagaaagagcgttataaagtgccttacggt
accgtattagagaagttagaagacagtgaagtggcagcaggcgaaattatcgcaaactgg
gatccacatactcacccaattatctctgaagtagccggtagtgttaagtttgttgacatg
atcgacggcgtaaccatgacacgtcaaactgacgagttaactggtttgtcttcagttgtt
gtactagaaattggtgcgcgtacttctgcaggtaaagaattacgtccagccattcgtcta
gttgatgctgacggtaacgacctaatgatccctggtactgaagtaccagctcaatacttc
ttacctggtaacgcgattgtgtcgaaagacgataacgcgaaaatcaacgttggtgacgca
ttagcacgtattccacaagaatcgtctaaaacacgcgacatcaccggtggtctaccacgt
gttgctgacttattcgaagcgcgtaagccaaaagagcctgcaattcttgcagaaatctca
ggtactatctcgttcggtaaagagacaaaaggtaagcgtcgtctagtgattacaccagct
gatggtggtgaacactatgaagagatgatccctaaatggcgtaacttaaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttattgctgacggcccagaagctgcacatgacatt
ttacgtcttcgtggtatccacaacgtagcaaactacattgtgaacgaagtacaggatgtt
taccgcttacagggtgtaaagatcaacgacaagcacatcgaagttatcattcgtcaaatg
ctgcgtaagtgtttaatcacatctgcaggtgacagtgagttcttagaaggcgagcaagtt
gaagtttcacgcgtgaaaatcgctaaccgtgagttaattgctcaaggtaaagcgccagct
acgtatgaacgtgaactattgggtattaccaaagcatctttggctactgaatcattcatt
tcagctgcatcgttccaggaaaccacacgtgtgttaactgaagcagccgttggtggtaag
agcgatccattacgtggtctgaaagaaaacgtaatcgtaggtcgtttgatccctgctggt
actggttatgcttaccataaaacgcgtaatgaagagcgtgcaaaatctgcaaactctaaa
ggcaacgttgaagtggcaaccgtcacagcaagtgaagctgaacaaaacctagcggatcta
ctaaatttggctggtagccaagattaa
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