Shewanella inventionis: K8B83_04365
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Entry
K8B83_04365 CDS
T07895
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sinv
Shewanella inventionis
Pathway
sinv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K8B83_04365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinv03019
]
K8B83_04365
03009 Ribosome biogenesis [BR:
sinv03009
]
K8B83_04365
Enzymes [BR:
sinv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K8B83_04365
Messenger RNA biogenesis [BR:
sinv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K8B83_04365
Ribosome biogenesis [BR:
sinv03009
]
Prokaryotic type
rRNA helicases
K8B83_04365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UAL44094
LinkDB
All DBs
Position
complement(957281..959125)
Genome browser
AA seq
614 aa
AA seq
DB search
MSSNERTFRELGLSEYLLRSLDELGYEKPTPIQSASIDPLMAGKDIIGQAQTGTGKTGAF
ALPLLNKIDMKINAPQILVLAPTRELAVQVAEAFGSYAKHMKGFHVLPIYGGQSMQQQLN
ALKRGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWVLEHKPAN
SQLALFSATMPEQIKRVANKHLSNPVNISIAASHTTVESIDQRFVQVSQHNKLEALVRVL
EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILI
ATDVAARGLDVERIGHVVNYDIPYDSEAYVHRIGRTGRAGRTGMAILFVTNREMRMLRTI
ERATNSRISPMKVPSPETVAERRLSRLGEQIQETLNGDLDFMKNAVAELCQQLEVDTDLL
AAALLQQVQQERPLQLPNITERQRDSRDERSDRGSDRGDRNSDRPRRERSDRSSRPAPTS
FGSADTLKDNPDVKMNRYVIDVGRENGVGVGNIVGAIANEANIDSRFIGQIQLFDQVTTV
DLPDGMPKDILAHLKKVRVCGRPLNIREAGDEVFADSGRGAPRKPRSDRPRGDRPRGDRP
AGAERRPRKPHDNG
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccaatgaaagaactttccgcgaactcggcctgtctgagtatttgttgcgttca
ctcgacgagcttggttatgaaaaaccaacgccaatccagtcagccagtatcgacccgctt
atggcaggtaaagatattattggtcaagcgcaaaccggtaccggtaaaacaggtgcattc
gccctgcctttactaaacaaaatcgacatgaaaatcaacgctccacagattttagtgttg
gctccaactcgtgaactagccgttcaggttgcagaagcttttggtagctatgcaaaacac
atgaaaggcttccacgtactgccgatttacggcggtcaaagcatgcaacaacagttaaac
gcccttaagcgtggcccgcaagtgattgttggtacaccaggtcgtgtaatggatcacatg
cgtcgtggcacacttaaattagactcattaaaagcattagtgcttgatgaagctgatgaa
atgttaaaaatgggattcatcgatgatatcgaatgggtactagaacataagccagctaac
agccaacttgcgttgttctctgctaccatgcctgagcaaatcaagcgcgtagcaaacaag
catttaagcaaccctgttaacatcagcattgctgcaagccacacgactgttgagtcaatt
gaccaacgttttgtgcaagtttctcaacacaacaaacttgaagcgttagtacgcgtatta
gaagttgaaaatactgaaggtattatcattttcgttcgtacacgtaacagctgtgttgaa
ttagccgaaaaattagaagctcgcggttacgcatcatcaccactacacggtgacatgaac
caacaagcacgtgagcgtgctgttgatcagctaaaacgtggcaaactagacattttgatt
gcaactgacgttgcagcccgtggtttagacgttgaacgtattggtcacgtagtaaactac
gacattccttacgattcagaagcttatgtacaccgtattggtcgtactggtcgtgctggc
cgtaccggtatggcaattttgtttgtgaccaatcgtgaaatgcgtatgttacgcactatc
gaacgtgcaacaaacagccgtatttctccaatgaaggtacctagccctgagactgttgca
gagcgtcgtttatctcgtttaggtgagcaaatccaagaaaccttaaacggcgacttagat
ttcatgaaaaacgccgtagctgagttatgccaacagcttgaagtcgacaccgacttacta
gcggctgcattattacaacaagtgcagcaagagcgtccgctacagttaccaaacattact
gaacgtcaacgtgattcacgtgatgagcgcagtgatcgtggaagtgatcgtggtgaccgc
aatagcgaccgtccacgtcgtgagcgtagtgatcgcagcagccgtccagctcctaccagc
tttggtagcgcagacacattaaaagataacccagacgttaaaatgaaccgttatgttatc
gatgtgggtcgtgaaaatggcgtaggcgtgggtaacattgttggcgcgattgctaacgaa
gctaacatcgacagccgtttcattggtcaaatccaattattcgaccaagtaactaccgtt
gacttaccagatggcatgccaaaagacattcttgctcaccttaaaaaggtgcgtgtatgt
ggccgcccattaaatatccgtgaagccggtgatgaagtgtttgctgattctggccgtggt
gcgccacgtaagcctcgcagtgaccgccctcgtggtgatcgtccacgcggtgaccgtcca
gctggtgctgagcgtcgtccacgtaagccacatgacaatggctaa
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