Shewanella inventionis: K8B83_05405
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Entry
K8B83_05405 CDS
T07895
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
sinv
Shewanella inventionis
Pathway
sinv02020
Two-component system
sinv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sinv00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
K8B83_05405
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K8B83_05405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sinv03021
]
K8B83_05405
Transcription machinery [BR:
sinv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K8B83_05405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
DUF5039
Motif
Other DBs
NCBI-ProteinID:
UAL44284
LinkDB
All DBs
Position
complement(1187541..1189025)
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AA seq
494 aa
AA seq
DB search
MKASLQLKMGQHLTMTPQLQQAIRLLQLSSLELQQEIQQALDSNPLLEIEDEFSQAKDPL
KESRDQSDTDFSDNSNVSVEKDTSTVDTTESISKETMDDLPMDTTWDEVYTASPMSGSGS
ASMRDDDMPFQGETTEGLYEHLEWQKNLTPFSDTDLAIATAIIDAIDERGYLTQSTEEIL
EAMGDESIELDEVQAVLKRIQHFDPVGVAARDLSECLLIQLAQYADSTPHIDNARMLIKD
YLDLIAGRDFRLLMRKTRLKEDELRDAITLIQSLNPRPGLLITATEDEYVIPDVTVFKKN
GRWVVELNPDNMPKIGVNQQYAAMARSSKNPSDTQFIRGHLQEAKWFIKSLESRNDTLLK
VANCIVQFQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGLFELKYF
FSSHVSTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAELLAEQGINVARRTIAKYR
EAMLIPPSNQRKSL
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgtcactccaacttaaaatgggtcaacacctaactatgacccctcaattgcag
caagccattcgcttgctgcaattatcttcattggagctacagcaagaaatccaacaagca
ttggactcaaacccactgcttgaaatagaagatgaattttctcaagccaaagatccatta
aaagaaagccgagatcaatcagacaccgacttcagtgacaatagcaatgtcagtgtagaa
aaagacacttcaaccgtcgacaccactgaatctatcagtaaagaaaccatggacgatctc
cccatggataccacatgggatgaagtctacaccgcatcacccatgtctggttcaggcagc
gccagcatgcgtgacgacgatatgccttttcagggtgaaaccaccgaagggttatatgaa
catttagagtggcaaaaaaacttaaccccgttttcagacaccgaccttgccattgcaaca
gccatcattgatgccatcgatgaacgcggctatctcacccaaagtacagaagaaatacta
gaagcaatgggcgatgaaagcattgaacttgacgaggtacaagcggtactgaagcggatc
caacattttgatcccgtaggtgtagctgcgcgcgatctcagtgaatgcctactcattcag
ctagctcaatatgccgactcaaccccacatattgataatgcgcgcatgcttatcaaagac
tatttagatttgattgctggccgcgattttaggttattaatgcgtaaaactcgtctaaaa
gaagatgaactacgcgatgcgattaccctcattcagtcacttaatcctcgtccagggtta
ttgattaccgcaactgaagatgaatatgtcatccctgatgtcaccgtgtttaaaaagaac
ggtcgttgggttgttgaattaaatccagacaatatgcccaaaattggtgttaatcaacaa
tatgcggccatggcacgtagcagcaaaaacccgtcagatacccaatttattcgtgggcat
ttgcaagaagcaaaatggtttatcaaaagccttgaaagccgaaatgataccctattaaaa
gtagccaattgtattgtgcaattccaacaagggtttttcgaatacggcgaagaagccatg
aaacccatggtactaaacgacattgcagaagcagtcgaaatgcacgagtcgaccatttcg
cgtgtcacgacacaaaaatacatgcacaccccacgagggttatttgaactaaaatacttt
ttctccagccatgtcagtactgacgatggtggagagtgctcatcaacagcaatccgcgcc
tttattaagaagctggtcgctgcagaaaaccagaaaaaaccacttagcgacagcaaaatg
gcagaacttctggcagaacagggcataaacgttgctcgtcgtacgattgcaaaataccgt
gaggcaatgctaatcccgccctcaaaccaacgtaagagtctataa
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