Shewanella inventionis: K8B83_05515
Help
Entry
K8B83_05515 CDS
T07895
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sinv
Shewanella inventionis
Pathway
sinv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K8B83_05515 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinv03019
]
K8B83_05515 (rnr)
03016 Transfer RNA biogenesis [BR:
sinv03016
]
K8B83_05515 (rnr)
Enzymes [BR:
sinv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
K8B83_05515 (rnr)
Messenger RNA biogenesis [BR:
sinv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K8B83_05515 (rnr)
Transfer RNA biogenesis [BR:
sinv03016
]
Prokaryotic type
tRNA degradation factors
K8B83_05515 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
TFIIE_beta
OB_RNR_1st
HTH_11
Motif
Other DBs
NCBI-ProteinID:
UAL44305
LinkDB
All DBs
Position
1206119..1208575
Genome browser
AA seq
818 aa
AA seq
DB search
MINDPHFEREQDKYDNPIPSREYILEYLRAQKSPVSRDKIAEALNITDEEPLEALRRRLR
AMERDGQLVFTRGQSYGLPERMDLLSGSVIGHRDGFGFFKPDEGGDDLFINNRDMLMYFH
GDKVLAQKAGTDRRGRREARIVRLVQERTAALVGRYHVDGGMGFVIADDRRITQEILIDN
NDRNGARAGDVVVVELTRRPGRFVKAAAKVTEVLGKTMAPGMEIEIALRNYDLPHTWSAV
IEKKLKRIPDEVPDSDKEGRVDLRHLPLVTIDGEDARDFDDAVYAEVKPSGGWRLWVAIA
DVSHYVRTDSALDIEARARGNSVYFPSQVIPMLPEKISNGLCSLKPHVDRLCMVAEMTIS
AAGKLSGTKFYPAVMHSHARFTYTQVAAMLEGGPIAPEHEALFPHLLCLQSLYLTLDERR
AERGAIAFETLETQFIFNEQRKIEKIVPRARNQAHKIIEECMILANVASAKFVKKHKGEV
LYRVHEAPSEQKLANFKEFLAERGLSMDGGLEPTPTDYQNLMLKIADRPDFELIQVMLLR
SMRQAIYTPDNEGHFGLALEAYSHFTSPIRRYPDLILHRVIKYLLAKEQGEIKDKWTSDG
GYQYQLEELDLLGEECSTTERRADEATRDVSDWLKCEYMQDHVGDTFDAVIASVTSFGLF
VRLNELFIDGLVHISSLASDYYQFDPMRQRLIGENTRQVYQVGDEVTVKVAAVNLDDRQI
DLLMEGDSGKGRGKKPRTGNKPLTARERANLEGAKLASNSSNKKSDKPKARKSRSGDKST
VAKKPVGAKKSSPKTKGSDAAKTKSTVKKTPAKRSKRK
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgatcaacgatcctcattttgagagagagcaagacaagtacgacaaccctattcctagc
cgcgagtacattttagagtatttgcgtgcgcaaaagtctcctgttagccgcgataaaatt
gccgaagcgcttaatattaccgacgaagaacctttagaggcgctccgtcgacgcttgcgc
gccatggaacgtgacgggcaattagtgtttactcgcggacaaagctacggcttacctgag
cgaatggacttattatcaggcagcgtaataggtcatcgcgatgggtttggtttttttaaa
ccggacgaaggcggtgacgacctgtttatcaataatcgcgatatgctgatgtattttcat
ggcgataaagtcttggcacaaaaagccggtaccgaccgtcgtggacgccgtgaagcacgt
attgttcgtttggtacaagaacgaacggctgctttagttgggcgttatcatgtcgatggt
ggcatgggctttgtgatcgccgatgatcgccgcatcactcaagaaattttaatcgataac
aacgatcgtaatggtgcaagagccggtgatgtcgttgtagttgaactcacccgccgtcca
ggccgttttgttaaagctgcagctaaagtgactgaagtgcttgggaaaacgatggcgcca
ggcatggaaatcgaaattgcactgcgtaattacgatttaccacacacctggtctgccgtg
attgagaaaaagcttaagcgaattccagacgaagtgcctgactctgacaaagaaggtcgc
gtcgatttacgccacttacctctggtgactattgacggtgaagatgcccgtgactttgat
gatgcggtttatgccgaagtcaaaccaagtggtggttggcgtttatgggttgcgattgct
gatgtgagtcattatgttagaaccgactcggccctagatattgaagctagagctcgtggt
aattcagtgtattttccgtcacaagtcatccctatgctgccggaaaaaatctctaatggt
ttatgttcattaaagccgcatgttgatcgtttgtgcatggttgcagagatgactatttct
gccgctggaaaattatcgggtactaaattttaccctgctgtgatgcattctcatgctcgg
tttacctatactcaggtcgccgcaatgcttgaaggggggcctattgctcctgagcatgaa
gcattgtttccgcatttattgtgcttacagtccttgtatcttacgttagatgagcgccgc
gctgaacgtggagctattgcttttgaaactttggaaactcagtttattttcaatgaacaa
cgtaaaattgaaaaaattgttccaagggctcgtaatcaagcacataaaattattgaagaa
tgcatgattttggcaaacgtggcatcagctaagtttgttaaaaagcacaaaggtgaagtg
ttatatcgggtgcacgaagcaccgtctgagcaaaagctggcaaactttaaagagtttctt
gctgagcgtggtttgagcatggatggtggcttagaaccgacgccaacagattatcaaaac
ttgatgttaaagattgctgataggccggactttgagctgatacaagtgatgctgttgcgt
tcaatgcgccaagccatttacacgccagacaacgaagggcacttcggtttagccttagaa
gcctactcgcactttacctcgccaattcgtcgctaccctgatttaatattgcatagagtg
atcaaatatttactcgcaaaagaacagggtgaaattaaagataagtggacatcagacggt
ggctaccaatatcagcttgaagaactcgatttactcggtgaagaatgttcaacaacagag
cgacgtgcagatgaagccactcgtgatgtgagcgattggctaaagtgtgagtacatgcaa
gatcatgttggcgacacatttgatgccgttattgcctcagtcactagctttggcttgttt
gttcgcttaaacgagctgtttattgatggtttggttcatatttcaagcttagcgagtgat
tactatcagtttgatccaatgcgtcagcgtttaattggtgaaaacactcgtcaagtgtat
caagtgggtgatgaggtgacggttaaagttgctgccgtgaatttagatgaccgtcaaatt
gacctgttgatggaaggtgatagtggtaaaggccgtggcaaaaaaccacgaacaggcaat
aaaccgctgaccgctcgcgagcgtgctaaccttgaaggcgcaaaattagcaagcaattca
tctaataaaaagtcggataaacccaaagcgcgtaaaagtcgttcaggtgataaatctaca
gtcgctaaaaagcctgttggtgcgaaaaagtcatcacccaaaaccaaaggctcggatgct
gctaaaaccaaatctacagtaaagaaaacccctgccaagcgcagcaagagaaagtaa
DBGET
integrated database retrieval system
