Shewanella inventionis: K8B83_10450
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Entry
K8B83_10450 CDS
T07895
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sinv
Shewanella inventionis
Brite
KEGG Orthology (KO) [BR:
sinv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinv03019
]
K8B83_10450 (hrpA)
Enzymes [BR:
sinv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K8B83_10450 (hrpA)
Messenger RNA biogenesis [BR:
sinv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K8B83_10450 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND_NTPase5
nSTAND3
T2SSE
SLFN-g3_helicase
ABC_tran
NACHT
PhoH
TsaE
Motif
Other DBs
NCBI-ProteinID:
UAL45189
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All DBs
Position
2351512..2355387
Genome browser
AA seq
1291 aa
AA seq
DB search
MNSDLHPLSKAYLNLCYQTDAAKIRRRLFRINKEPESEKKSQTIAKLTEDAEKAYAKAQQ
RLQDRPVISYPDELPVSQKREDIASAIANNQVVIVAGETGSGKTTQLPKICLELGLGTRG
LIGHTQPRRLAARSVANRVADELNSPLGDVVGFKVRFADAISENSYIKLMTDGILLAELT
SDRYLNQYDAIIIDEAHERSLNIDFILGYLKQVLKKRPDLKVIITSATIDVDRFSKHFDN
APVIEVSGRTFAVETRYRPLVRDNDADLDVSDGIFAAVDELIAEGPGDILIFMNGEREIR
DTADLLRKQQYRDTEILPLYARLSYGEQSKVFKNHIGRRIVLATNVAETSLTVPGIRYVI
DPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDEMDFIQRPEFT
DPEILRTNLASVILQMLAIGLGDIAGFPFIQPPDQKHIRDGFLLLEELQAVKKQRGELVL
TPLGKDLAKIPLDPRLARMVIESNKLGCLHETLVITSGLSIQDPRERPIDKKQAADECHR
RYADKDSDFVSWIKLWDHVKDQKHELSASQFRKQCKDEYLAYLRVREWQDLYTQVKQAVH
ELKWRVSDNAASYEQLHKALLSGLLSHIGFKGENNEYLGARNRKFFVFPGSPLAKKGPKW
IMAAELTETSRLFARCCAKIEPEWLESLASHLVKKNYLEPHFEAKAGSVVALENQVLYGL
TIVNRRRVQYGPIDAVEAREIFIRSALAEGQLQTKEAFFVNNQKLLNDIESLEHKSRRRD
ILVDEQVLVDFYEPLVPAGIYNAPLFFAWWKKARQETPDLLDYSQALLMQRSADHISALD
FPDVWHKANLALQVSYHFEPGNVDDGVSVHIPVALINQIDDSDFDWLVPGLREEKLVALI
KSLPKNLRRNFVPAPDYARACYQAMKPFELPMIESMCKQLLRMSGVRITADDFDLTQLTE
HLKMNFKIEDDKGGLVAQGRDLETLKGQLQGVVAKAIRKVADKGIEQEAITSWTFGDLPV
QYQQRKGNYEVKAYPALIDNKTDVSIKLFDDEHEAKRHHRVGLRRLLLINIPSPVKHLQQ
ALPNKAKLAMYFNPFGQVQILIEDIINAAVQQLLDQKQLDIRNEAQFEQAKDWVRQELNP
TAEHIALHVEQVLTIYQRIKKRLKGKISLDIAFAMSDIQTQLDSLVYKGFVEDCGWQRLP
DVARYLKAIENRLEKLPVDPTRDRLHMHSISKVQEALTAQLAKVPRSQPVPELLVEARWM
IEEYRVSCFAQVLGTAYPISEKRILNHISQV
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ttgaattcggaccttcacccgctatctaaggcgtatcttaatctttgttatcaaaccgat
gcggctaaaatccgtcgtcgtttatttcgtattaataaagagcccgagtctgaaaaaaaa
tctcaaaccatagccaagcttaccgaggacgcagaaaaggcctatgctaaagcgcagcaa
cgtctgcaagatcggcctgttattagttacccagacgagctccccgtatcgcaaaaacgc
gaagacatcgcttctgccattgccaataatcaagttgtaattgtggctggtgaaacgggc
tccggtaaaaccactcagttgcctaaaatttgtttagagttagggctaggcactcgtgga
cttatagggcacacacaaccgcgtcgtttagctgctcgcagtgttgctaatcgtgttgcc
gacgagcttaatagcccattaggtgacgtggttggttttaaagtgcgatttgcagatgcg
ataagcgaaaacagctatataaagctgatgaccgacggcatcttgctggctgagctaaca
tcagatcgttatttaaatcaatatgatgccattattatcgatgaggcacacgaacgaagc
ctaaacatcgattttatcttgggttatttaaagcaagtgctgaaaaagcgcccagattta
aaagtcattattacctccgccaccatcgatgtagatcgtttctctaagcatttcgataac
gccccagttattgaagtgtcaggacgcacgtttgctgttgaaacacgttataggccattg
gtgcgcgataacgatgccgacttagatgttagcgatggcatttttgctgcggtagatgaa
ctgatagccgaaggccctggcgatattttgatctttatgaacggtgagcgcgaaattcgc
gacaccgctgatttattgcgtaaacaacaatatcgcgataccgaaatactacctttatat
gctcgtttgtcttacggcgaacaatcgaaagtatttaaaaaccatattggtcggcgcatt
gtattagccaccaacgtggccgaaacctcattaaccgtgcctgggatccgctatgtgatt
gaccctggtacggcacgtattagtcgctacagctatcgcactaaagtacagcgcttgcca
attgagccgatatcgcaagccagtgccaatcagcgtcaaggccgatgtggtcgtgttggt
ccgggtatttgtattcgcctatacgatgaaatggactttattcagcgtcctgaatttacc
gatcctgagattttacgtactaatttagcctcagttattttgcaaatgttggccattggt
ttaggcgacattgccggttttccatttattcagccgccagatcaaaaacacattcgtgat
ggctttttattactagaagaactacaagccgttaaaaagcaacgtggtgagttagtatta
accccattgggcaaagatttagctaaaattccacttgatcctcgtttagccagaatggtt
attgagtcaaataagttaggttgtttacatgaaaccttagtgatcacctctgggttgtct
attcaagatccccgtgagcgtccgattgataaaaaacaagcggccgatgagtgtcatcga
cgttatgctgataaagactccgactttgtcagttggataaaactgtgggatcacgttaaa
gaccaaaagcatgaactgtcggcgagccaatttagaaaacaatgtaaagatgagtattta
gcctatttacgtgttcgcgaatggcaggatttgtatacccaagttaagcaagccgtccac
gaacttaagtggcgtgtgagcgacaatgctgcaagttatgagcaattacacaaagccttg
ttatcaggtttgctcagtcacatcggttttaaaggtgaaaacaacgaatatttaggtgcc
cgtaatcgtaagttctttgtgtttcctggatcgccattagccaaaaaaggccctaaatgg
attatggcagccgaactcacagaaacatcgcgtttgttcgcccgttgctgcgccaaaata
gagcctgaatggctcgagtctttagccagtcatttagtgaaaaagaactacctagaaccc
cactttgaagccaaagcgggcagtgtagtcgcgcttgaaaaccaagtgctatacggctta
accatcgttaatcgtcgccgggtgcaatatgggccaattgatgcagttgaggcgcgtgag
atttttattcgtagtgcattagcagaagggcaattacaaaccaaagaggccttttttgtt
aataaccaaaaactgcttaacgacattgaatcgttagagcataagtcgcgtcgccgtgac
attttggtggatgaacaagtgctagtggatttttatgagcctttagttccggcgggtatt
tacaatgcgccactttttttcgcctggtggaaaaaagcacgccaagaaactcctgactta
ctcgattacagccaagcattattaatgcagcgtagtgctgatcatatttcggcactggac
ttccctgacgtgtggcataaggccaatttggccttgcaagtcagttatcattttgaacca
ggcaatgtcgacgatggtgtgtcggtgcacatcccggtagcgctgataaatcaaatcgac
gacagtgactttgattggttagtaccaggactgcgtgaagaaaagctggtggccttgatt
aagtcactaccgaaaaatttacgccgcaattttgtgcctgcccccgattatgccagggcc
tgttatcaagcaatgaaaccctttgaattgccaatgatagagtcaatgtgtaagcaactg
ctgcgcatgagcggtgtgcgtattactgctgatgactttgacttaacccaattaactgaa
catcttaaaatgaactttaagattgaagatgataaaggtggtttagtggctcaaggccga
gatctagaaacgctaaaagggcagttacaaggcgttgtagccaaagctattcgtaaagtg
gcagacaaaggcattgaacaggaggccatcaccagctggacatttggtgatttaccggtt
caataccagcagcgtaaaggcaactacgaagttaaagcctacccggcccttattgacaat
aaaacggatgtgtcgattaagctttttgatgacgagcacgaagctaagcgtcatcatcga
gtgggcttacgcaggttgttgctaatcaatattccgtcgcccgttaagcatttacaacaa
gcgttacccaataaagccaaattggccatgtactttaacccgtttgggcaggtacaaata
ttaattgaagatattatcaatgcggctgtgcagcagttacttgatcaaaagcaattagat
atacgcaacgaggcacagtttgaacaggctaaagattgggttcgtcaggagcttaatcct
accgctgagcacattgcattacatgttgagcaagttttaaccatttaccagcgaattaaa
aaacgtttaaaaggtaaaatcagtttagatattgcatttgcaatgagtgatattcaaacc
cagttagacagcttggtgtacaaaggatttgtggaagattgcggctggcagcgattacct
gatgttgcccgttaccttaaagcaatcgaaaacaggttagaaaaactgcccgttgatccc
actcgtgaccgtctacatatgcacagtattagtaaggtgcaagaagcgctgacggcacaa
ctggctaaagtgcctcgctctcaacctgtgccagagctattggttgaggccaggtggatg
attgaagaatatcgagtgtcgtgctttgctcaagtgttagggacggcctatccgatctct
gaaaaacggatccttaatcatattagtcaggtttag
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