Shewanella inventionis: K8B83_14415
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Entry
K8B83_14415 CDS
T07895
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sinv
Shewanella inventionis
Brite
KEGG Orthology (KO) [BR:
sinv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sinv03016
]
K8B83_14415 (rnd)
Enzymes [BR:
sinv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
K8B83_14415 (rnd)
Transfer RNA biogenesis [BR:
sinv03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
K8B83_14415 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
UAL42072
LinkDB
All DBs
Position
complement(3282809..3283921)
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AA seq
370 aa
AA seq
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MLTFEYISDDASLLSLVEQYQQSTLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPIA
ITDLSPFWQLLTNENIVKLVHSCSEDLEVFAHYGECQPSPLFDSQIAASLAGMGHGLGYA
KLVEACLQVEIDKGESRTDWMKRPLSEAQLQYAANDVYYLYQLYPQLQQQLAEKQREAWL
FEEGQRMTEGRMSLPDGDTIYLKVKNAFQLNGKQLAYLKVLAKWRLNKAVNRNLALGFVV
KDHALIALAKKQPSTLAELSRLTELTEQEKRVHGKDLIAVMATADLNNLPEEVDIVALKS
GYKSAFKEIKNRLTEVCERENVPLEFVGSKRHIHEYLLWLYHTKQTATPLLLCGWRGELI
GDLLGDIRFS
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
ttgttaacgtttgaatatatcagtgatgatgccagccttttatcattagttgaacaatac
caacaaagcacattattagtgctagacactgagtttgttcgtacgcgaacttattatgcc
aaattaggccttatccaggcttatgatggcaaaacactggccttgattgatcctattgcc
attactgatctcagcccattttggcagctattaaccaatgaaaatattgttaaattagtg
cattcatgtagtgaagatttagaagtatttgcccattatggtgaatgtcagccaagtcca
ctgtttgacagtcaaattgcggcaagccttgcaggtatggggcacggattaggttatgcc
aaattggttgaggcgtgtttacaggttgaaattgataaaggcgagtcacgtaccgattgg
atgaaacggccactttctgaagcgcagttgcagtacgcagcaaatgatgtgtattactta
tatcaactgtacccacaacttcagcaacaacttgcagaaaagcagcgtgaagcctggttg
tttgaagaaggtcagcgtatgaccgaagggcggatgtcattgcccgacggtgataccatt
tatcttaaagttaaaaatgcgtttcagcttaatggtaagcaattggcctatttaaaagta
ttggcaaagtggcgtttaaataaggctgtcaatcgtaatttggcgttaggttttgtggtt
aaagatcatgcacttattgctttggcaaaaaagcaacctagtacgcttgcagaattaagc
cgattaacagaattaactgagcaagaaaaacgtgtacatggcaaagatttaatcgccgtt
atggcgacagcagatcttaataatctgcctgaagaagtcgacattgttgcacttaagtcg
ggctacaagtcagcgtttaaagagataaaaaatcgcttaactgaagtgtgcgaacgagaa
aatgtgccactggaatttgtcggttctaagcgccatattcatgaatatttgctatggctt
tatcacactaaacaaacagcaacgccattattattgtgtggttggcgaggggaacttatt
ggtgatttgcttggcgatattcgttttagctaa
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