Shewanella inventionis: K8B83_15355
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Entry
K8B83_15355 CDS
T07895
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sinv
Shewanella inventionis
Pathway
sinv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K8B83_15355 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinv03019
]
K8B83_15355 (rne)
03009 Ribosome biogenesis [BR:
sinv03009
]
K8B83_15355 (rne)
Enzymes [BR:
sinv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
K8B83_15355 (rne)
Messenger RNA biogenesis [BR:
sinv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K8B83_15355 (rne)
Ribosome biogenesis [BR:
sinv03009
]
Prokaryotic type
rRNA processing factors
K8B83_15355 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UAL42245
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All DBs
Position
3461196..3464669
Genome browser
AA seq
1157 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY
GADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVVQEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMSELEVPNGMGLIVRTAGVGKESTEL
KWDLKVLQHHWDAIQEAAQSKAAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEA
KLHIGLVRPDFVERVKLYESEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRSTESLAL
SILRLMEEEAIKENTTQIEAIVPVDVAAFLLNEKRKAIRITEERHEVEVYVIPDAHMKTP
EYRVVRRKSDDEVSESSYKRVEKPASKLYEPRKLERAASPEPALKGFAAPQKSATVEAAP
AQAQATKTPVASAPSQPGFFARIVSAISALFSTSDSQNKDTKTATQTTDSAQNNNRRPRR
NDNRNENSNRNTSRNDNRRQRNDGDNAKNTNEPRTRNKRNDRNSKNNAQDDNAKNKPRTE
RTDKALQQVNEPKAAEVKTNTEKSPKQEAARERRQRRNMRRKVRIENEQSEAVAAKATDA
DTANNTATDKPAVVVDVPEVKTTEPKATEAKSEAKAPRSRRQPRKDRSEQSTEAQAKNET
TTVSENADNAPVEPVSQTANNGNKTDATDVKAQTNSDNVEKTTVATNDVNINDASVAAQH
ASNSDASDDSDAETAEDTKVEGREGQRRSRRSPRHLRAAGQRRRRDDTDTNQQAVFTSVD
ELEKQLNAEQSKQTGSTSSTEDTPTVKTDSAETNTPAVEAPKAAEPVVEAAPQAPKESEP
VAEAAPQAPKAVEPVAEAAPQAPKAAEPVVEAAPQAPKAAEPVAEAAPQAPKEAEPVAEA
APQAPKAAEPVVEAAPQAPKAVEPVAPVTNDKSTLNASAPMAKPAPVVRQAKVETAAETQ
VEVQADTIAVVETAPKAPAKASRFGSMVSSDMTKPTVGVREQKAVPQGKAYDTQTENSAP
KSVIANSASSGMARPGK
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttaatcaatgcaactcaatcagaagagttgcgtgttgcccttgtagat
gggcagcaactgtatgatctcgacattgaaagtccaggtcacgaacaaaaaaaatcaaat
atctacaagggtaaaatcacccgcgtagaaccttcacttgaagcggcatttgttgactat
ggcgctgatcgtcatggttttttaccgctaaaagaaatcgcacgcgagtactttcctaaa
ggatactctttccaaggtcgtccaaacatcaaagaagtggtgcaagaaggccaagaagtc
atcgttcaaattgataaagaagagcgtggcaataaaggtgccgcacttactaccttcatc
agtttagccggctcttacctcgtattaatgccaaataatccacgcgctggcgggatctcg
cgtcgtattgaaggcgatgagcgtactgaactaaaagaagccatgagtgagcttgaagtg
ccaaatggcatgggcttaattgtacgtactgcgggtgtaggtaaagagtctaccgaatta
aaatgggacttaaaagttctacaacaccactgggatgccattcaagaagccgctcaaagc
aaagcagcaccattcttaattcatcaagaaagtaacgtgatcgtacgtgctattcgtgac
tatttacgtcgcgatgtcggtgaaatccttatcgaccatccacgcatttttgaagaagct
aaactacacattggcctagttcgccctgattttgttgagcgcgttaagctatatgaatct
gaagtgccattgtttactcacttccaaatagagtctcaaattgaatctgcattccaacgt
gaagtgcgtttaccatcaggcggttcaattgttatcgatcctacagaagcattaacgtct
atcgatatcaactctgctcgcgcgactaaaggcggcgatattgaagaaactgcactaaac
actaaccttgaagccgcagacgaaattgcacgtcaattacgtcttcgtgacctaggtggt
ttagtggttatcgactttatcgatatgacacctgtgcgccatcagcgtgaagttgaaaac
cgtttacgtgatgccgttcaccatgaccgcgcacgtgttcagttaggccgcatttctcgt
tttggcttaatggaaatgtcacgtcaacgtttacgcccttcgcttgaagagtcagcagca
catctatgcccgcgttgtcatggacaaggtactattcgcagtactgaatcacttgcactg
tctattttacgtttaatggaagaagaagccattaaagaaaataccacgcaaatcgaagcc
attgtgccggttgatgtggcagcattcttattgaacgaaaagcgcaaagcaattcgtatc
acagaagaacgtcatgaagttgaagtgtatgtcatcccagatgctcacatgaagacacca
gaatatcgcgtcgttcgtcgtaagagcgatgatgaagtgagcgaatcaagctataaacgc
gttgaaaagccagcatcaaaactatacgagccacgtaaacttgagcgagctgcatcacca
gagcctgctttaaaagggtttgccgccccacaaaaatcagccactgttgaagctgcacca
gctcaagcgcaagcaactaaaacacctgttgcatctgcaccatcgcaaccaggctttttt
gctcgtattgtgtcagccattagcgcactgttttcaactagcgatagccaaaacaaagac
actaaaacagctacacaaacaacagattcagcacaaaacaataatcgtcgccctcgtcgc
aatgacaaccgcaacgaaaatagcaatcgcaatacaagccgcaacgacaaccgtcgtcag
cgtaatgacggcgacaatgcaaaaaacaccaacgagcctcgtactcgtaataagcgtaat
gatcgtaatagcaaaaataacgctcaagacgacaacgctaagaacaagccgcgtactgaa
agaacagacaaagcactgcaacaggttaatgaacccaaagcggcagaagtcaaaacaaac
acggagaagtcgcctaagcaagaagctgctcgcgaacgtcgtcaacgccgtaatatgcgt
cgtaaagtgcgtatcgagaacgaacaaagcgaagccgttgcagcaaaagcgactgatgca
gacacagctaataacactgcaacagacaaacctgcagtagtggtggacgtgcctgaggtc
aaaacaacggagccaaaagcaactgaagcaaaatctgaagccaaagctccgcgcagccgt
cgccagccacgtaaagacagaagtgagcaatcaactgaggcacaagctaaaaacgagaca
actaccgtttcagaaaatgctgataacgcaccagtagaacctgtatctcaaaccgctaac
aacggcaataaaacagatgcgacagatgtcaaagcgcaaaccaatagcgataatgttgaa
aaaaccactgtcgctaccaatgacgtgaacatcaatgacgcctctgtagcagcacaacat
gcttcaaatagtgatgcatctgatgacagtgatgcagaaacggctgaagatactaaagtt
gaaggacgtgaaggtcaacgccgtagccgtcgtagccctcgccacctaagagccgcaggt
cagcgtcgtcgtcgtgatgatacagacactaaccaacaagcagtatttacctctgttgat
gagttagaaaagcaattaaatgctgagcaatctaaacaaacgggatcaacctcttcaact
gaagatacccctacagtaaaaactgactcggccgaaactaacacgccagcagttgaagcg
cctaaagcggctgagccagttgtagaagctgcccctcaagcgccgaaagaatctgagcca
gttgcagaagctgcccctcaagcgcctaaagcagttgagccagttgcagaagctgcccct
caagcgcctaaagcagctgagccagttgtagaagctgcccctcaagcgcctaaagcagct
gagccagttgcagaagctgcccctcaagcgcctaaagaagctgagccagttgcagaagct
gcccctcaagcgcctaaagcagctgagccagttgtagaagctgctcctcaagcgcctaaa
gcagttgagccagttgcacctgtcactaatgacaagtcaacgttaaatgcttctgcgcca
atggcaaagcctgcaccagttgtacgtcaagcgaaagtagaaacggccgctgaaactcag
gttgaagttcaagcagacaccatagcagttgttgaaactgcacctaaagcgccagcaaaa
gccagtcgttttggttcgatggtgtcatctgatatgaccaaacctactgttggtgttcgt
gaacaaaaagcagtgccacaaggcaaagcttatgacacacagactgaaaacagcgcacca
aaatcagtgatagctaacagcgcatcatcaggtatggcgcgtccaggtaagtag
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