Shewanella inventionis: K8B83_15780
Help
Entry
K8B83_15780 CDS
T07895
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sinv
Shewanella inventionis
Pathway
sinv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sinv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K8B83_15780 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sinv03400
]
K8B83_15780 (recB)
Enzymes [BR:
sinv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K8B83_15780 (recB)
DNA repair and recombination proteins [BR:
sinv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K8B83_15780 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
AAA_30
DUF7134
Motif
Other DBs
NCBI-ProteinID:
UAL42315
LinkDB
All DBs
Position
3559206..3562934
Genome browser
AA seq
1242 aa
AA seq
DB search
MTNNVTPLNALTLPFYGTSLIEASAGTGKTYTISGLYLRLLLGHGGYTPLTCEQILVVTF
TNAATEELRDRIRKRINLAFKRFLGLPINDPFIEQLYQDTTEDERPIALRRLDLALKSLD
EAAIFTIHGFCQRILSDMAFESSLLFESEFTLDDSEFLHHAVRDFWREVCYPLPPLLAQA
ISEHFAEPDDLAKSLRPLLGATQAKLANNPIAFDKLSEQLTVCLSRFKRLWQAKQQDTFE
LLSALPLNGQRFGKASDNYPKLAKVFDDISHWVAVGQGLPPIKALEHIALSDLKLNKGGV
VPTAAQAPLLEHIDTLLELIQQLIPSFLVRARDGIRQRFTGQKQQRNLMTPDDLLLSLAI
ALSHNPLTLGQAIAARFPVALIDEFQDTDPLQFAIFNQVYQQPLASQLELEPHQDKAPGK
LSLLMIGDPKQAIYAFRGADIYTYIAARQQTQAHYNLDTNYRSSSSLVAGVNQLFSQHTN
PFINSEIPFDLVKTPSSATHKVLKEATKRKDTLRIKLLAEDSDIGLNKATARQKLASDTA
SEIKRLLTESQQGHCGIQTAKNEPDEPLIAKHIAVLVRDRNEAAIMQAELSARQIGAVFL
SRDSVFNTLEAREMAILLHALATPKNERAIRAALATELVGFSALQIHQFNQDEEQRQQVL
SQFIHWHELWLQRGVMPALLNFASETQLIHRYLSLSQTNTTRDIAENDDNDDAPLSTKGS
GERRLTDFRHLAELLQQKATELDGSSALINWYEQQLISTQSGDEQQLRLESEQNLVQIVT
IHKSKGLEYPVCFVPFISLARNNNRRPTPMLYHQGEQLVWDIDATDEGWEQLKQEILAED
LRLLYVALTRPVYLCYLYIANQSRILKAGISSQLHETGIGYLLGITDKNTDFNLIQTKVK
HIATIDAISVEQVSDAIDTSSLAKIDDNDIELCAKQVTRKQSLAWRVGSYSGLVKHLPHE
RVAPGADDEDFSDELLQLQLQDETLDEPQLDRFSFERGANAGSFMHLVLELFDFTKADTE
LPGALQKAMKQYGFDETLWFDPLSLWYQQILATPLTKHQSTNTGSDAICLMQLPLKQTRV
EMEFYLPISALQAQQLNPILQQYGYIAGLDFDTLQGMLKGFIDLTFEHQGRFYIADYKSN
HLGNHFSDYNQTAMENAINSHRYNLQYILYTLALHRYLSLRLPGYNYQQHIGGCYYLFLR
GMSPDHPGCGVFFDKPPQALIEQLDTLFMGQHPTSTVEAPSC
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgaccaataatgtcacaccattaaatgccctaacattgcctttttatggtacaagctta
atcgaagccagtgccggcacaggtaaaacctatactatatcgggattatatttaaggctg
ctgcttggccatggcggctacaccccattaacttgcgagcaaattttagtggttaccttc
acgaatgccgccactgaagagcttcgcgacaggatccgtaaacgcattaacctcgcattt
aaacgttttttgggtctaccaattaacgacccgtttattgaacagctatatcaagacaca
acagaagatgagcgcccaattgccctgcgccgcctcgatttagcgctaaaatcattagat
gaagccgccatttttaccattcacgggttttgccagcgcattttgtcagacatggccttt
gagtcgtcactcttgtttgagtctgaattcaccttagatgacagcgaatttttacatcat
gccgtgcgcgatttttggcgagaggtctgctatccactcccgccgctgttagcccaggcc
attagcgaacactttgctgagccagacgatttagccaaaagcttgcgcccgctgttaggc
gcaactcaggcaaagttagcgaataaccccattgcatttgacaagctcagcgaacaatta
accgtctgtttgagccggtttaagcgcttgtggcaagccaaacaacaagacacctttgaa
ttactcagcgcattaccgctaaatggccaacgctttggtaaagccagcgacaattacccc
aaacttgccaaagtatttgacgacatcagtcactgggttgccgttggtcagggcttacca
cctataaaagccctagaacacattgccttatccgatttaaagctaaacaaaggcggtgta
gttccaacggcagcacaagctccactgcttgaacacatcgatacgttacttgagttaata
caacagcttataccatcgtttttagtccgtgcacgcgacggtattcgccagcgttttacc
gggcaaaaacagcaacgcaacttaatgacacctgacgacctattgctcagtttagccata
gcgctcagccacaatccactcactttaggccaagcgattgcagcgcgatttcctgtggca
ttaatcgatgaattccaggataccgatccactgcaatttgccatttttaatcaggtatat
cagcagccattagcatcacaacttgaactcgaaccacaccaagacaaagcacctggtaaa
ctcagtttgttaatgatcggtgaccctaaacaggccatttatgcctttaggggcgcagat
atttacacttatatcgctgcgcggcaacaaacccaggcccactataacttagacacaaat
tatcgctcatcgtcatcattagtcgcgggcgttaatcagttatttagccagcataccaat
ccatttataaacagcgaaatcccgtttgatctcgtcaaaacgccaagctctgccactcat
aaagtgcttaaagaagcaacaaagcgtaaagacacattgaggataaaactgttagctgaa
gacagcgatattgggctcaataaagccacagcaagacaaaaactggccagcgataccgcc
agtgaaataaaacgcctactcacagagtcgcaacaaggccattgcggtattcaaacggcc
aaaaatgaacccgatgagccactcatcgctaaacacatagccgtcctggtgcgcgaccgt
aacgaagccgctatcatgcaggctgagctttcagcacggcaaataggcgcagtgtttctt
agccgtgacagcgtatttaacacccttgaagcccgtgaaatggccattctattacacgca
ttagctacgcctaaaaatgaacgggctattcgagcggcactcgccacagagcttgtgggt
tttagtgctctgcaaattcatcaatttaatcaagacgaagagcagcgccagcaagtcctc
agccaatttatacattggcatgagctttggctgcagcgtggtgtaatgccagcattactc
aattttgccagtgaaacccaattaattcatcgctacttatcgctgtcgcaaaccaatacc
acaagagacattgccgagaatgatgacaatgatgacgcgccgctgagcaccaaaggttca
ggcgagcgacgcctaaccgactttagacatttagcagaattgcttcaacaaaaggctacc
gaactcgacggcagcagcgccttaatcaattggtacgaacaacaacttatcagcacccaa
agcggtgatgagcaacagctacgcctagagagcgaacaaaacctggtgcaaattgtcacc
atacacaaaagcaaaggcttagaatatccggtgtgctttgtgccgtttatcagcctggcc
agaaataacaaccgacgcccaacgcccatgctttaccatcaaggcgaacaattagtgtgg
gacatagacgccaccgatgaaggttgggagcaattaaagcaagagattctcgccgaagac
ttacgcctactttacgtcgcattaacgcggcctgtgtacctatgttacttatatattgcc
aatcaaagcagaatattaaaggctgggatcagtagccaacttcacgaaactggcattggc
tatttgttggggatcaccgataaaaacaccgactttaatcttattcaaaccaaggttaaa
cacattgccactatcgatgccatcagtgttgaacaagtcagtgacgccatagacaccagc
tcactggctaaaatcgacgataacgacattgagctatgcgccaaacaagtcactcgtaag
caaagccttgcatggcgcgttggcagttattcaggtttggttaaacacctgccccacgaa
cgagtcgccccaggcgctgacgatgaagactttagcgacgaactgctgcaattgcagtta
caagatgaaaccctagacgagccacaacttgaccgttttagttttgaacgcggtgccaat
gccggtagctttatgcatttagtcttagagctatttgactttacaaaagccgataccgaa
ctgccaggcgcactgcaaaaagccatgaagcaatatggctttgatgaaacgctctggttt
gacccattaagtttgtggtaccagcaaattttagcgacgccgttaaccaagcatcaatca
acaaacacgggatcagacgccatctgcttaatgcaattaccgctgaagcaaacccgtgtc
gaaatggagttttatctgcctatttcagctttacaagcacagcaattaaacccgatttta
caacaatacgggtatattgccggcctcgactttgacaccttgcaaggcatgttaaaaggc
tttatcgacttaacctttgaacaccaaggtcgcttttacatcgccgattataaatcgaac
catttaggtaatcacttttcagactacaaccaaaccgccatggaaaatgcgattaacagc
caccgttataacttgcagtacattttgtataccctagcgttacaccgctatttaagcctt
aggcttccgggctacaactatcaacaacatatcggtggatgctattacttatttttacgt
ggtatgagcccagatcaccccggctgcggcgtgttttttgataagccacctcaagcatta
attgaacaacttgatacgctatttatggggcaacaccccacatcgacggtggaggcgcca
tcatgttaa
DBGET
integrated database retrieval system
