Shewanella inventionis: K8B83_19000
Help
Entry
K8B83_19000 CDS
T07895
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sinv
Shewanella inventionis
Pathway
sinv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K8B83_19000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinv03019
]
K8B83_19000
Enzymes [BR:
sinv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K8B83_19000
Messenger RNA biogenesis [BR:
sinv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K8B83_19000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_19
P-loop_SecA
AAA_22
Gag_p24
Flavi_DEAD
SecA_DEAD
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
UAL42880
LinkDB
All DBs
Position
4266491..4267792
Genome browser
AA seq
433 aa
AA seq
DB search
MKFESFSFAPEILRAIAECGYQSMTPVQKQAIPAIRRGEDVLASAQTGTGKTAAFALPIL
QKMCEVPKETLPSNTRTLILTPTRELAAQVADNISAYSKHLNFTVLTIYGGVKMDTQSQK
LKRGADVIVATPGRLLEHITACNLSLSNVDFLVLDEADRMLDMGFSADIKKILQAVNKNR
QNMLFSATFSSEVKKLANDMLDKPKVITVDKQNTTAATISQVIYPVEQRRKRELLSELIG
TKNWRQVLVFTATRDAADTLVKELNLDGIPSGVVHGEKAQGSRRRALREFVEGKIRVLVA
TEVAARGLDIQNLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADIE
KLIGQQIRRITVPGYEVGSREMLLKQIEKRRSFAKKQQRSDNVGAQMIAEKKMDGRRVKV
GKASSTVKYKKIK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgaatcttttagcttcgccccagaaatattacgcgcgatcgctgagtgcggt
taccaatcgatgacaccagttcaaaaacaagcgatcccagctatccgccgcggcgaagat
gtactcgccagcgcgcaaacgggtaccggtaaaaccgcagcgtttgctttacctatttta
caaaaaatgtgtgaagtgccaaaagagacattaccatcaaacacacgcacgttaattctt
acacctacccgtgaacttgcggcacaggttgcagacaacatcagtgcttacagcaaacac
cttaacttcaccgtattaaccatttacggtggcgttaaaatggacacgcaatcgcaaaag
ctaaaacgtggtgctgatgttattgtggccaccccaggccgtttgctcgagcacatcaca
gcttgtaacttaagtttgtcaaacgttgactttttagtgctcgatgaagctgaccgtatg
cttgatatgggctttagcgccgatattaaaaaaatcctccaagcggtaaacaaaaaccgc
caaaacatgttgttttcagcgacgttttctagtgaagtaaaaaaactcgctaacgacatg
cttgataaacctaaagtcattactgtagataaacaaaacaccacggcggcgaccattagc
caggtgatttatccggttgaacaacgccgtaagcgtgaattgttgtctgaactgatcggc
acaaaaaactggcgtcaagtactggtgtttaccgccactcgtgacgcagcagacacctta
gtaaaagaattaaaccttgacggtattccatcaggtgttgttcacggagaaaaagctcaa
ggtagccgtcgccgtgcattacgtgagtttgttgaaggtaaaatccgtgtattagtggcc
actgaagttgctgctcgtggccttgatattcaaaaccttgaatacgtggttaattatgat
ttaccgtttttggcagaagattatgtccaccgtattggccgtacaggccgtgcaggtaaa
accggtgtggctatttcgtttgtcagccgtgaagaagaacgcacgttagccgacattgaa
aaacttattggccaacaaattcgccgtattaccgtaccgggttatgaggtaggtagccgt
gaaatgttgcttaaacaaattgaaaagcgccgtagcttcgctaaaaaacagcaacgtagc
gacaacgttggcgctcaaatgattgccgagaaaaaaatggatggccgccgtgttaaagtg
ggtaaagccagtagcacagtaaaatacaaaaaaattaagtaa
DBGET
integrated database retrieval system
