Shewanella inventionis: K8B83_19395
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Entry
K8B83_19395 CDS
T07895
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
sinv
Shewanella inventionis
Pathway
sinv03030
DNA replication
sinv03430
Mismatch repair
sinv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sinv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K8B83_19395 (holA)
03430 Mismatch repair
K8B83_19395 (holA)
03440 Homologous recombination
K8B83_19395 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sinv03032
]
K8B83_19395 (holA)
03400 DNA repair and recombination proteins [BR:
sinv03400
]
K8B83_19395 (holA)
Enzymes [BR:
sinv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K8B83_19395 (holA)
DNA replication proteins [BR:
sinv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K8B83_19395 (holA)
DNA repair and recombination proteins [BR:
sinv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K8B83_19395 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
TraI_2_C
DUF4388
DUF6063
Beta-lactamase2
Motif
Other DBs
NCBI-ProteinID:
UAL42947
LinkDB
All DBs
Position
4344258..4345292
Genome browser
AA seq
344 aa
AA seq
DB search
MRVYPDQLKQHLKNLPDCFLLFGDDPWLIENCKQQILTAAKKQGFEERVQLSQETGFNWS
DLTQEWQAMSLFADRRIIELTLPQGKPGTDGAAAFQTLLQHPNPDMLLIVQGPKAGIEQT
NSKWFKSLDAKGIYLPCTTPEGKQFERWLDSRIAHYSLIVNHDAKAMLFTLFEGNLLAAE
QAMQMLQLLSPKQQITPEQLSEYFEDQSRFSVFQLCDAILANHQKHAQHMLAQLQAEGTA
MPILMWALFKEINLLLTLKLALHQGEQINQLWGKHRIWDKRKPLYQAALTRLDLDQIEHM
LAFASQLELNLKQKGIEDWVGISHFCILFDPRAHNRLAHIELAD
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtctaccccgatcaactcaaacaacacctaaaaaacttacctgattgtttttta
ttatttggtgatgatccttggttgattgaaaactgcaaacaacaaattttaaccgcagcc
aaaaaacaagggtttgaggagcgagtacaactcagccaggaaaccgggttcaattggagt
gatttaacccaagaatggcaagcaatgagtttatttgccgatcgcaggatcattgagtta
accctaccacaaggcaaaccaggaaccgacggtgctgcggcatttcaaacgctgttacaa
cacccaaacccagatatgctgttaattgtacaagggcccaaagcggggattgaacaaacc
aacagtaaatggtttaaatcgctagatgccaaaggcatatatttaccttgcaccacacca
gaaggcaaacagtttgaacgctggctcgacagccgaattgctcattacagcctcatagta
aaccatgatgccaaagccatgctatttaccttatttgaaggtaatttattagcggcagaa
caagctatgcaaatgttgcagctgttaagccctaagcaacaaatcacgccagaacaactg
agcgagtattttgaagaccaatcccgttttagtgtgtttcaactttgcgatgcgatactg
gctaatcatcaaaagcatgcacaacacatgctggcacagctacaggcagaagggacagca
atgcccatcctaatgtgggcattatttaaagaaatcaatctactgctcactttaaaactc
gcacttcatcagggtgaacagataaatcagttgtggggtaaacaccgtatttgggacaaa
cgcaaaccactttatcaagccgcactgacacgattagatctcgatcaaattgaacacatg
ttggcatttgcttcacaacttgagctaaacctgaaacaaaaaggcatagaggattgggtt
ggcatcagccatttttgcattttattcgaccctcgcgctcacaaccgcttggctcacatc
gagttagctgactaa
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