Shewanella inventionis: K8B83_20025
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Entry
K8B83_20025 CDS
T07895
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sinv
Shewanella inventionis
Pathway
sinv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K8B83_20025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinv03019
]
K8B83_20025
Enzymes [BR:
sinv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K8B83_20025
Messenger RNA biogenesis [BR:
sinv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K8B83_20025
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
CMS1
Flavi_DEAD
UvrD-helicase
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UAL43060
LinkDB
All DBs
Position
4483916..4485397
Genome browser
AA seq
493 aa
AA seq
DB search
MSFASLGLNAAILKAVEKQGYDTPSAIQAQAIPAVLAGQDVMAAAQTGTGKTAGFTLPIL
ELLSKGSRAQRGQVRALVLTPTRELAAQVQESVATYGVNLPLKSAVVFGGVSIIPQLAAL
RNGVDILVATPGRLLDLCQQKAISFNKLEILVLDEADRMLDMGFIRDIKKVLALLPAQRQ
NLMFSATFSDEIRELAKGLVNNPVEISVTPRNATANTVTQCVYPLDKTRKSMALIELINT
NDWKQVLVFSRTKHGANRLAKSLDAANIKAAAIHGNKSQTARTKALADFKAGTVQVMVAT
DIAARGIDIDQLPFVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVGLEEVKLLHDIER
LIKRTIERKQLPGFEAPFTIPEAGSRSGGHKANSVKKPNPNRSKHAQQANTAQGDKPARQ
YDSRQQARSKDGQPQGANKPKAAGNRAEAIANGNKPPQRNRPPRRSGTGGSANSGTPASK
GGVNPYANAKVKS
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgcctcacttggtctgaatgctgctattttaaaagcagttgaaaaacaaggt
tatgacaccccctctgcaatccaagcacaagccattccagccgtattagcaggccaagat
gtgatggctgcagcacaaaccggtacgggaaaaaccgcaggctttactctgccaattcta
gaattattgtccaaaggcagccgtgctcaacgcggccaagtgcgtgcattagtattgacc
ccaacgcgtgagttagccgcacaagtacaagaaagcgttgccacctatggtgttaacttg
ccgctaaaatcagcagtggtgtttggtggcgtgtcgattatcccgcaacttgccgcactg
cgtaatggcgtagatattttagtggcaacccctggtcgactgctcgatctttgccaacaa
aaagcaattagcttcaataaattagagattttagtgttagacgaagcagaccgcatgcta
gacatgggctttattcgcgacattaaaaaagtattagccttattacctgcgcagcgccaa
aacttaatgttttcggcaacgttttctgatgaaatccgcgaactcgccaaaggcttagta
aacaaccctgtcgaaatttcagtgacacctcgtaacgcgacagcgaataccgttactcag
tgtgtatacccattagacaaaactcgtaaatcaatggcactaatcgagttgattaacacc
aatgattggaagcaagtgttggtgttttcacgcactaaacatggcgccaaccgcttagcc
aagagtttagatgcagccaatattaaagctgctgcaattcatggtaataaaagccaaaca
gcgcgaacaaaagctttagcagactttaaagctggcactgtgcaagttatggtggcaaca
gacatcgccgcgcgcggtatcgacattgaccaactgccttttgtggttaactttgacctg
ccaaacgtaccagaagattatgtgcaccgtattggccgtacaggtcgtgctggtgcaaca
ggtcaagcggtgtcgttagtcggtcttgaagaagttaagttattgcatgatatcgagcgg
ttaattaaacggaccattgagcgtaaacaactgccaggatttgaagcaccgttcactatc
cctgaagctggcagtcgctcaggtggtcataaagccaacagcgtgaaaaagccaaaccca
aatcgcagcaagcatgctcaacaagccaatactgcacaaggtgataagccagcacgccaa
tatgactcgcgccaacaagcacgaagcaaagatggccagccgcaaggcgctaataagcca
aaagctgccggtaacagagctgaagcaattgctaatggtaataaaccaccacagcgtaac
cgtccaccgcgtcgcagcggcacaggcggttcagcaaatagtggcacacctgcatcaaaa
ggtggcgttaacccttacgctaatgccaaagtaaaaagctaa
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