Shewanella inventionis: K8B83_20225
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Entry
K8B83_20225 CDS
T07895
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sinv
Shewanella inventionis
Pathway
sinv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K8B83_20225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinv03019
]
K8B83_20225
Enzymes [BR:
sinv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K8B83_20225
Messenger RNA biogenesis [BR:
sinv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K8B83_20225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UAL43094
LinkDB
All DBs
Position
complement(4520646..4521893)
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AA seq
415 aa
AA seq
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MSFAELSLHPSLLSRLAELDYQQATPIQLSAIPVILSGQDVMAGAQTGTGKTAAFALPIL
HAILSQQALNPHNNFSAIRALVLVPTRELAQQVHHSIEQYAHGSSITSVMVYGGVSIGAQ
IRQLAGGSDILVATPGRLLDLLRKRALSLSQLTHLVFDEADRMLDMGFKDEIIDVLKQVP
KTRQTLLFSATLDDRIFSFSKRLLQSPKVIEVAKRNTTAASIVERVYNLDSNRKCAALCH
LIKAEKWQQTLIFSRTKQGADALVKQMKHEGVSAEVFHADLSQALREQVLSQFKNGELTA
LVATDVAARGLDINELNYVVNMELPFQVEDYVHRIGRTGRAGNQGQAITFLSVDDEPILI
KLEAFLDRRLPQQWLTGFEPDLTQLAVTTRKTTKSALKQQARKKALGQRPSRNKK
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgcagaattatcgttacacccaagcttattatctcgattggctgaattagat
taccagcaagccacccctatacaattaagtgccattccagtgatattaagcggtcaagat
gtgatggcaggggcacaaaccggcacggggaaaacggcagcatttgcattacccattttg
catgccattttgagccagcaagcgcttaatcctcataataattttagcgccattcgcgcg
ctggtattagtacctacgcgcgagcttgcacaacaagttcaccacagtattgagcaatat
gcccacggcagcagcattaccagtgtgatggtgtacggtggtgtaagtattggcgcgcaa
attcgccagcttgctggtggctcagacatattagtggcaacacctgggcgtttattggat
ttgctgcgtaaaagagcgttgtctttatcgcagttaactcaccttgtatttgacgaagcc
gatcgtatgttagatatgggctttaaagacgaaattattgatgtgttaaaacaagtgcca
aaaacccggcaaacgctgttgttttcggccaccttagatgatcgtatttttagttttagt
aagcgtttattgcagtcgcctaaagtcattgaggtggccaagcgtaataccactgccgca
agcattgttgagcgtgtttataacctcgatagcaaccgaaagtgtgccgccttgtgtcat
ttaatcaaggcagaaaaatggcaacaaaccttgatttttagccgcaccaaacaaggtgcc
gatgctttagttaaacaaatgaagcacgagggcgtgagtgctgaagtgtttcatgcagat
ttatcgcaagccttgcgtgagcaagtgttaagccaatttaaaaatggcgagttaaccgca
ttggtggctacagatgttgcagccagaggcctagacataaacgagcttaattatgtcgtt
aatatggaattaccgtttcaagtagaagattatgtccatagaattggccgtacaggtcgt
gcaggtaatcaaggccaggcgatcacgtttctcagtgttgatgatgagccaatactgata
aaactcgaagcctttttagatcgccgcctaccgcaacaatggttaacagggtttgagcct
gatttaactcaacttgctgttactactcgtaaaacgaccaaaagcgcgttaaagcagcaa
gcccgcaaaaaagccttaggtcaacgcccatcacgtaataaaaaataa
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