Streptococcus iniae ISNO: DW64_06805
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Entry
DW64_06805 CDS
T03286
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sio
Streptococcus iniae ISNO
Pathway
sio03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DW64_06805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sio03400
]
DW64_06805
Enzymes [BR:
sio01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DW64_06805
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DW64_06805
DNA repair and recombination proteins [BR:
sio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DW64_06805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_8
Zn_ribbon_6
Zn_ribbon_TFIIB
Zn_ribbon_IS1595
DZR
NFACT_N
Zn_Tnp_IS91
Auto_anti-p27
DUF7573
Motif
Other DBs
NCBI-ProteinID:
AHY18028
LinkDB
All DBs
Position
complement(1373262..1374101)
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AA seq
279 aa
AA seq
DB search
MPELPEVDTVRRGLSDLVTGKKIASLQVTVPKMVKTDFDLFQLLLPGQTIYSVDRRGKYL
LFYFENDVLISHLRMEGKYLLFEGAVPENKHFHFFFTFTDGSTLVYQDVRKFGTFDFLPQ
NALENFFLSRKIGPEPTETDFKLKDFEAALLLSQKPIKPNLLEQKLVAGLGNIYVDEVLF
AAKVHPARKSCHLKKAEMKRIHDETIRILKFAIEKGGSTIRTYQNTLGMDGSMQDYLQVY
GQTDKPCPRCGTAIEKIQFAGRGTHFCPKCQKKEVVSLA
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattaccagaggttgacacggtccgtcgtggtttatcagatttggttacagga
aaaaagattgcatcacttcaagtgacagttcctaaaatggttaaaacagattttgacctt
tttcaattattattgccgggtcaaaccatctactctgtagatcgtcgtggcaaataccta
ctgttttattttgaaaatgacgtgctcatttcacatttacgaatggaaggaaaatatttg
ctttttgagggggcagtacctgaaaataagcattttcattttttctttacatttacggat
gggtctactttggtttatcaggatgttcgtaagtttgggacctttgattttctgccccaa
aatgctttagaaaatttctttttatctcggaaaatcggtccagaaccaacagaaacagac
tttaaattgaaagactttgaagcagctctgctattatctcaaaaacccatcaagccaaat
ttgttagagcaaaaacttgttgccggtctgggaaatatttatgtggatgaagttcttttt
gcggccaaggttcatccagcacgtaaaagttgtcatttgaaaaaagctgaaatgaaaaga
attcatgatgaaaccatcaggattttgaagtttgcgattgaaaaaggtggatcgaccatt
agaacataccagaatactctgggcatggatggctcaatgcaggactatttacaggtttac
ggtcagacagataagccttgtccacggtgtggcactgccattgaaaagatacaatttgct
ggaagggggacccatttttgtccaaagtgtcagaaaaaagaagtcgtgtcattggcttaa
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