KEGG   Streptococcus iniae ISNO: DW64_08930
Entry
DW64_08930        CDS       T03286                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
sio  Streptococcus iniae ISNO
Pathway
sio03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sio00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DW64_08930
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sio03019]
    DW64_08930
Messenger RNA biogenesis [BR:sio03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     DW64_08930
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B Lactamase_B_2 RMMBL SIS_2
Other DBs
NCBI-ProteinID: AHY18426
UniProt: A0A1S1XY28
LinkDB
Position
1793472..1795154
AA seq 560 aa
MSNIDLKPNEVGVFAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDYS
YIVDNIDRVKALVITHGHEDHIGGIPFLLKQANVPIYAGPLASALIRGKLEEHGLLRDSK
MYEIHHNTELTFKNLSVTFFRTTHSIPEPLGIVIHTPQGKIVCTGDFKFDFTPVGEPADI
HRMAALGEDGVLCLLSDSTNAEVPTFTNSEQEVGKSILKIIEGIHGRIIFASFASNIFRL
QQAAEAAVKTGRKIAVFGRSMEKAIVNGIELGYIKVPKGTIIEPNEIKNYHANEVLIMCT
GSQGESMAALARIANGTHRQVTLQPGDTVIFSSSPIPGNTTSVNKLINTIQEAGVDVIHG
KVNNIHTSGHGGQQEQKLMLRLMKPKFFMPVHGEYRMQKVHAGLAEDTGIPEENIFILEN
GDVLALTSDSARRAGHFNAQDIYVDGNGIGDIGTAVLRDRRDLSEDGVVLAVATVDFDTQ
MILAGPDILSRGFIYMRESGDLIRESQRVLFNAIRIALKNKDASIQSINGSIVNALRPFL
YEKTEREPIIIPMVLTPDKD
NT seq 1683 nt   +upstreamnt  +downstreamnt
atgtcaaatatcgatttaaaacctaacgaagtcggcgtctttgccattggtggtctaggg
gaaatcgggaaaaacacttacggaattgaataccaagatgaaatcatcattgttgatgct
ggtattaaattccctgaggatgatcttttaggtattgactatgttatccctgattattct
tacatcgttgataacattgaccgtgttaaagctcttgttattacgcatggtcatgaagac
cacatcggtggtatcccattcttgcttaaacaggctaatgtcccaatttacgccgggcca
ttggcgtcagcccttattcgtggaaaattagaagaacacggtttactgcgtgattctaaa
atgtacgagattcaccacaatacagagttaacctttaaaaacttaagcgtgactttcttc
cgtacaacccactctattccagaaccgcttggtattgtcattcatacccctcaagggaaa
attgtctgtaccggtgactttaagtttgacttcacacctgtcggagagccagctgatatt
catcgcatggctgcacttggggaagatggggttctttgcctcttatctgactcaacaaat
gctgaagttccaacctttactaattctgaacaagaagttggtaaatcaatccttaaaatc
atcgaaggcattcacggacgcattatctttgcatcttttgcttcaaatattttccgtttg
caacaagctgctgaagctgccgttaaaacaggtcgtaagattgctgtctttggtcgctca
atggaaaaagctattgtcaacgggattgaacttggctatatcaaggttccaaaaggcact
attattgagccaaatgaaatcaaaaattaccatgctaacgaagtgttaatcatgtgtact
ggtagccaaggggagtctatggctgcactagcaaggattgcaaatggtacgcaccgtcag
gttactctacagcctggtgataccgttatattctcgtctagtccaatccctggtaataca
acaagtgttaacaaacttatcaataccattcaagaagctggtgttgatgttattcacggc
aaggttaataatatccacacatctggtcatggtggtcaacaggagcaaaaattgatgctt
cgtttgatgaaaccaaaattcttcatgcctgttcatggtgaataccggatgcaaaaagtt
catgctggcttagctgaggatactggaatccctgaagaaaatattttcatccttgaaaat
ggtgatgtccttgctttaacaagtgattctgcgcgacgtgcggggcacttcaacgcacaa
gatatttatgttgatggtaatggtattggtgatattggaacagcagttttgagagatcgt
cgtgacctttcagaagatggtgttgttcttgcagttgctactgttgactttgacacacaa
atgattcttgcaggtccagacattttaagtcgtggttttatctatatgcgtgagtctggt
gatttgattcgtgaaagccaacgcgttttatttaatgctattcgtatcgctcttaaaaac
aaagatgctagcatccaatctattaacggctctatcgttaacgccttacgcccattctta
tacgaaaaaacagaacgtgaaccaattattattccaatggttctcacacctgataaagat
taa

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