Streptococcus ilei I-P16: N597_06420
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Entry
N597_06420 CDS
T02880
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sip
Streptococcus ilei I-P16
Pathway
sip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N597_06420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sip03019
]
N597_06420
03016 Transfer RNA biogenesis [BR:
sip03016
]
N597_06420
Enzymes [BR:
sip01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
N597_06420
Messenger RNA biogenesis [BR:
sip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N597_06420
Transfer RNA biogenesis [BR:
sip03016
]
Prokaryotic type
tRNA degradation factors
N597_06420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
RNase_II_C_S1
S1_RRP5
CSD
HTH_DeoR
EcsB
Motif
Other DBs
NCBI-ProteinID:
AGY38594
LinkDB
All DBs
Position
complement(1270300..1272660)
Genome browser
AA seq
786 aa
AA seq
DB search
MKSKIIDYLKQEGKAQVDQLAQAIGSTDAKGFRELIKTISLMERRRQLTFEENGFLSLLD
AKPKGTITVKGIFHAHKSGFGFVSLEGEEEDLFIGRNDVNHAIDGDTVEVVITKVADRQK
GTAAEGKIMDVLEHSLQTVVGQIVLDEEKPKYAGYIVSKNQKISQRIYVKKPALQLEGTE
VLKVAIEQYPSRKHNYFVATVQDVVGHVTDPGIDVLEVLESMDIVSEFPEAVLKEAESIP
DKPSEKDIEGRLDLRDEITFTIDGADAKDLDDAVHIKRLEGGNYELGVHIADVSYYVTEG
SALDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQVDRLTQSAIMEIDERGRVLRYQ
ITQTVIKTTFRMTYSDVNEIIAGDQEKREEYQAIVPSIEAMVGLHQILEGMREKRGALNF
DTSEAKILVNPQGKPVDIVLRQRGIAERMIESFMLIANETVAEHFAKRKLPFIYRIHEEP
KAEKVQKFIDYASSFGILIYGTASSMSQETLQDIMKKVEGEPYADVLSMMLLRSMQQARY
SEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVREYGKDSEVASHFEQVIPDIASQSSS
RERRAIDAEREVEAMKKAEYMEDYVGEEYDALVSSVVKFGLFVELPNTVEGLIHITTLPG
FYHFNERDLTLRGEKSGVTFRVGQEIRIRVERADKMTGEIDFSYIPSELDLIEKGHKASG
RKEGGPSSKRRPSKKEGERKQGGFRDNKRKHSPKDKKKKSKKPFYKEVAKKGVKHGKGRG
KGRRTK
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtaaaattattgattatttaaaacaggagggaaaagctcaggttgatcaattg
gcacaagccattgggagtacagatgccaaaggttttcgtgaactgattaagaccatttcg
ctaatggagcgacgtcgtcaactaacctttgaagaaaatggctttttaagtctccttgat
gctaaaccaaaagggaccattactgtgaaagggatttttcatgctcataaaagtggcttt
ggttttgtcagcttagagggggaagaagaggatctctttattggacgaaatgatgtcaac
cacgccattgatggagatacagttgaggttgtgatcaccaaggtagccgatcggcaaaag
gggacagcggcagaggggaaaatcatggatgtcttggagcatagtctccaaacagttgtc
ggccagattgttttggatgaagaaaaaccaaagtatgcaggctacatcgtttcaaagaat
caaaagattagccaacggatctacgtgaaaaagccagccctgcaattggaggggaccgaa
gttctcaaggttgccattgaacagtatccgagtcggaagcacaactactttgtggccact
gttcaagatgtggttggacatgtgacagatcctggaatcgatgtcttggaagtcctggag
tccatggatatcgtctcagaatttccagaagcagtcctcaaagaagcagaaagcattcca
gacaagcctagtgagaaagatatagagggacgtttggaccttcgagatgaaatcaccttt
accattgatggtgccgatgccaaggacttggatgatgcggttcacattaagcgcttggaa
ggcggaaattatgaacttggagttcacattgcggatgtctcatattatgtgaccgaaggt
tctgccttggataaggaagctctcaaccgagcgacctctgtctatgtaacagatcgagtt
gttcccatgttaccagagcgactttccaatgggatttgttccctaaatcctcaagtggat
cgcttgacccaatcagccattatggagattgacgagcgtggtcgggtccttcgttaccag
attacccaaacggttattaaaacgaccttccggatgacctatagtgatgtcaatgagatc
attgcaggagaccaagagaagcgtgaggaataccaagctattgttccaagtattgaagct
atggttggccttcatcagatcttagaaggaatgcgggaaaaacggggagcccttaacttt
gataccagtgaagccaagattctggtcaatcctcaaggaaaaccggtcgatatcgtcttg
cgtcaacggggaattgcagaaaggatgattgaatccttcatgctaattgccaatgagaca
gtggctgagcattttgccaaacgaaaacttcccttcatttaccggattcacgaagaacct
aaagcagagaaggtgcaaaagtttatcgattatgcctctagctttggcatacttatttat
gggacagctagttcgatgagtcaggaaaccttgcaggatatcatgaagaaggtagaaggg
gaaccttatgctgatgtcttgtccatgatgttgcttcgttccatgcagcaggcgcgctat
tccgagcacaaccatggtcactatgggctagctgcggagttctatactcactttaccagt
ccgattcgccggtatccagacttattagtccaccgtatggtgcgagagtatggaaaagat
tctgaagtggctagtcattttgaacaggttattccagatatcgctagccaatcctctagt
cgggaacgccgcgctattgatgcggagcgagaagtagaagccatgaagaaggcagagtat
atggaggactatgttggcgaagagtacgatgctctggtatccagtgtcgtcaagtttgga
ctctttgttgaacttccaaatactgtagaaggtttgatccacatcaccaccttacctggt
ttttatcattttaatgagcgtgatttgaccttgcgaggggaaaaatcaggcgtgaccttc
cgagttggtcaagagatccgaattagggttgaaagagcggataagatgactggagaaatc
gatttttcttatatcccaagtgagctggatctgattgaaaaaggccataaagcttctggg
cgtaaggaaggaggtccatcttctaaacgccgtccttccaagaaagaaggagagcgaaag
caaggaggctttagagataacaagcgcaagcattctccaaaagacaagaagaaaaagagt
aagaaacctttttacaaagaagtagcaaagaaaggagtcaagcatggcaaagggcgaggg
aaaggtcgtcgcacaaaataa
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