Streptococcus iniae ISET0901: DQ08_01470
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Entry
DQ08_01470 CDS
T03285
Symbol
polC
Name
(GenBank) DNA polymerase III PolC
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
siq
Streptococcus iniae ISET0901
Pathway
siq03030
DNA replication
siq03430
Mismatch repair
siq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
siq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DQ08_01470 (polC)
03430 Mismatch repair
DQ08_01470 (polC)
03440 Homologous recombination
DQ08_01470 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
siq03032
]
DQ08_01470 (polC)
03400 DNA repair and recombination proteins [BR:
siq03400
]
DQ08_01470 (polC)
Enzymes [BR:
siq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DQ08_01470 (polC)
DNA replication proteins [BR:
siq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DQ08_01470 (polC)
DNA repair and recombination proteins [BR:
siq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DQ08_01470 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
RNase_H_2
DEDDh_C
Rv2179c-like
HHH_3
Zn-ribbon_8
VMAP-M4
YhfH
Motif
Other DBs
NCBI-ProteinID:
AHY15177
UniProt:
A0A3L8GP98
LinkDB
All DBs
Position
276737..281131
Genome browser
AA seq
1464 aa
AA seq
DB search
MSDLFVKLMEQIEMPLEMRRSSAFSSADISEVKVHSLSRLWEFHFTFAEILPIEVYKELD
DRLRTTFAAANIKVTFDIKATVVDYSDHLLQAYYQEAFEHAPCDAASFKSSFAKLTVTYD
QDRLLISTPDFVNNDHFKYNHIPNLQQQMHAFGFLDLQIEMVSDLEMTQVLQNHYENNRQ
AILEKAVQENLEAQKSLEALQPSEESAPKPTYDFKERVAQRQAGFEKATITPMIEVETEE
NRIVFEGMVFDVERKTTRTGRHIINFKMTDYSSSFAMQKWAKDDDELRKYDLIAKGAWLR
VQGNIETNPFTKSLTMNVQQVKEIVHHERKDLMPEGQKRVELHAHTNMSTMDALPTVESL
IDKAARWGHPAIAITDHGNVQSFPHGYHKARKAGIKAIFGLEANIVEDKVPISYDPISLD
LHEATYVVFDVETTGLSAVNNDLIQIAASKMYKGNIIEQFDEFIDPGHPLSAFTTELTGI
TDNHLLGAKPLKEVLELFQAFCKDTVLVAHNASFDIGFMNANYERHQLPTITQPVIDTLE
FARNLYPEYKRHGLGPLTKRFQVALEHHHMANYDAEATGRLLFIFLKEAREKHGITDLNQ
LNTKLVAEDSYKKARVKHATIYVQNQLGLKNIFKLVSLSNVKYFEGVPRIPRTVLDQYRE
GLLLGTACSDGEVFDAILTKGVDQAAAIADYYDFIEIMPPALYQPLIARELIKDEAGIQQ
AIFDLIEVGRKLNKPVIATGNVHYLEPEDEIYREIIVRSLGQGAIINRTIGRGEGAQPAP
LPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNSQDFANKIEDVEVVKGDLYTPYIEKAEET
VAELTYQKAFEIYGNPLPDIIDLRIEKELTSILGNGFAVIYLASQLLVNRSNERGYLVGS
RGSVGSSFVATMIGITEVNPMPPHYVCPKCQHSEFITDGSVGSGYDLPNKDCPECGASYQ
KDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPNAHLDVRDIFGAEYAFRAGTVGTVAEKT
AYGFVKGYERDYGKFYRDAEVDRLATGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQFP
AEDVTASWQTTHFNFHDIDENVLKLDILGHDDPTMIRKLQDLSDIDPQTIPADDPGVMAL
FSGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVWL
GNAQDLIKDGIATLKTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEDERNS
YIDAMRQNNVPDWYIESCGKIKYMFPKAHAAAYVLMALRVAYFKVHYPIMYYCAYFSIRA
KAFDLKTMSGGLAAVKAKMEEIALKKKNNEASNVENDLFTTLEIVNEMLERGFKFGKLDL
YRSDALEFQIEDDTLIPPFIAMEGLGENVAKQIVRAREEGEFLSKMELRKRGGASATLVE
KMDDMGILGNLPEDNQLSLFEDFF
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacttattcgttaaattaatggaacagatagagatgccgcttgaaatgagacgt
tcaagtgctttttcgtctgctgatattagtgaagttaaagtgcattctttatcacgattg
tgggaatttcattttacttttgctgagattttacctattgaggtctataaagaattagat
gaccgtctcagaactacttttgcggcagctaatatcaaggtgacttttgatattaaagca
acggttgttgattactcagatcacttattgcaagcctattaccaagaagcatttgagcat
gccccttgtgatgctgcgagttttaagtcgtcttttgctaagttaactgttacttatgat
caagatagacttttgatttcaacacctgactttgtcaataatgatcattttaaatataat
catattccaaatttacagcaacaaatgcatgcttttggctttttagatttgcaaattgaa
atggtttctgacttagagatgacacaggttcttcaaaatcattatgagaataaccgccag
gctatcttagaaaaagctgtccaagaaaatttggaggctcaaaagtcactggaggcctta
caaccaagtgaagagtcagcgccaaaaccaacttatgattttaaagaacgggtagcccaa
aggcaggctggttttgaaaaggcaacaatcacaccgatgattgaggtagaaacagaagaa
aaccgcatcgtttttgaaggaatggtttttgatgtggaacgcaaaacaacgcgaacaggt
cgacacatcattaactttaaaatgacagactacagttcatcttttgcgatgcaaaaatgg
gctaaagatgatgatgaattgcgcaagtatgacttaattgctaagggtgcttggctgcgt
gttcaagggaatattgaaaccaatccctttacaaaaagcttgaccatgaatgttcaacaa
gttaaagaaattgtccatcatgaacgtaaggatttaatgcctgaagggcaaaaacgtgtg
gaactccatgctcatacaaatatgtcaaccatggatgcattgccaactgtggagtcttta
attgataaggctgctagatggggacatcccgctattgctattactgaccatggcaatgtc
caatcttttccacatggttaccataaagctcgaaaagcagggattaaagccatttttgga
ctagaagctaatatcgtagaagacaaggtgccaatttcttacgaccctatttccttagac
ttgcatgaagcaacctatgttgtatttgacgtcgagacaacaggactttctgctgtcaat
aatgatttaattcagattgcagcttcaaaaatgtataaaggcaatatcattgaacaattt
gatgaatttattgacccagggcacccgctttcagcttttacaacagagttaacaggtatc
acagacaatcaccttcttggtgcaaaacccttaaaagaagttctagaactctttcaagca
ttttgcaaggatactgttcttgttgcccataatgctagttttgatattggctttatgaat
gccaattatgagcgtcaccagttgccgaccattacccagcctgttattgataccttagaa
tttgctagaaacctttacccagaatacaaacgtcatggtttggggcctttgaccaaacgt
ttccaggttgctttagagcatcaccatatggccaattatgatgcagaagcaacaggtcgt
ttgctctttatcttcctaaaagaagcaagggaaaagcatgggatcactgatttaaaccaa
ttgaacaccaagttagttgctgaagattcttataaaaaagcccgtgttaaacatgcaacc
atttatgtgcaaaatcaacttggtttgaaaaatattttcaaattggtcagcctttctaat
gtcaagtattttgaaggagtcccaagaattcctcgtaccgttttagaccagtatcgagaa
ggtttactgcttgggacagcttgttcagacggtgaagtatttgacgctattttaaccaaa
ggtgttgatcaagctgcagcaattgctgactattatgattttattgaaatcatgccacca
gccctttatcagcccttgattgcccgtgagttaattaaggatgaagcaggcattcaacaa
gctatttttgacctcattgaagttggtcgtaaactcaataaacctgttattgcaacagga
aatgttcattacttggagcctgaagatgagatttaccgtgaaatcattgttcggagtctt
ggtcaaggggctattatcaatagaaccattggccgtggggaaggggcccagcctgcacca
ctgccaaaagcccattttagaacaactaatgaaatgttggatgagtttgcctttttgggg
aaagacctagcttatcaagtggtggttcaaaattcacaggattttgctaataagattgaa
gatgtcgaagttgtaaaaggggatctttacacaccatatattgaaaaagccgaagaaaca
gtcgcagaattaacctatcaaaaagcctttgaaatctatggaaatcctcttccggacatc
attgatttaaggattgaaaaagagttaacttctattcttggtaacggttttgcggtgatt
tatcttgcttcgcaacttttggtaaatcgctcaaatgaacgtggctatcttgttggttct
agggggtctgttggttcgagttttgttgccaccatgattggaatcacagaagttaatcca
atgccaccacactatgtttgtcctaagtgtcaacattcagaattcattacagatggctct
gttggttcaggatatgacttgccaaataaggattgtcctgaatgtggtgcaagttatcaa
aaagacggccaagacattccctttgaaaccttccttggatttgatggggacaaggttcct
gatattgacttgaacttctctggtgatgaccaacccaatgcccatttagatgttcgtgat
atttttggagctgagtatgcttttcgtgcaggaaccgttggtactgttgctgaaaaaaca
gcttatggatttgttaagggttacgaacgtgactacgggaaattctaccgtgatgccgaa
gtggatcgcttggcaacaggtgctgcaggggtaaaaagaacgaccggtcagcatcctggc
ggtattgttgttattccaaattacatggatgtttatgactttactccggtccaattccca
gctgaggacgtgacagcctcatggcaaaccacccactttaacttccatgatattgatgaa
aacgtcctcaaacttgatattctagggcatgatgaccctacaatgattcgtaaactgcaa
gacttgtctgacattgatcctcagaccattcctgcagatgacccaggagtaatggctctt
ttttcaggaacagaagtacttggcgttactccagaacagattggaacaccaacagggatg
cttggtattccagaatttggaactaattttgttcgtggaatggttaatgagacgcatcca
actacttttgcagagttgttgcagttgtctggtctttctcacggaacagatgtttggctt
ggcaatgctcaagacctgatcaaagatgggattgcaaccctaaaaacagttattggttgt
cgtgatgatatcatggtttacctcatgcacgctggcttagaacctaaaatggcctttacc
attatggaaagagtgcgtaaggggctttggttaaaaatttcagaagacgagcgtaattcc
tatattgatgccatgcgtcaaaacaatgttccagactggtatattgaatcgtgtggaaaa
atcaaatacatgttccctaaagcccatgctgcagcatatgtgttgatggctttgcgtgtt
gcctactttaaggtgcattacccaatcatgtattattgtgcctatttctccattcgcgca
aaggcttttgatctaaaaaccatgagtggtggtttagctgcagtcaaagcaaaaatggaa
gaaattgcccttaaaaagaaaaataacgaagcttcaaatgtggagaatgatctctttacc
acacttgaaattgtcaatgaaatgttagagcgtggtttcaaatttggtaaacttgatttg
tatcgtagcgatgctttagaatttcaaattgaagacgataccttgattcctccttttatt
gctatggagggactgggagaaaacgttgcaaaacagattgtcagagctcgtgaagaagga
gagttcctttcaaaaatggaactcagaaaacgtgggggcgcttcagctacactagtagaa
aaaatggacgatatggggattttaggaaaccttccagaagataaccaattaagtttattt
gaagatttcttttaa
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integrated database retrieval system