Streptococcus iniae ISET0901: DQ08_01505
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Entry
DQ08_01505 CDS
T03285
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
siq
Streptococcus iniae ISET0901
Pathway
siq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
siq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DQ08_01505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
siq03019
]
DQ08_01505
03016 Transfer RNA biogenesis [BR:
siq03016
]
DQ08_01505
Enzymes [BR:
siq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DQ08_01505
Messenger RNA biogenesis [BR:
siq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DQ08_01505
Transfer RNA biogenesis [BR:
siq03016
]
Prokaryotic type
tRNA degradation factors
DQ08_01505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
KH-I_KHDC4-BBP
S1_2
OB_RRP5_4th
Peptidase_M2
SPATA25
Motif
Other DBs
NCBI-ProteinID:
AHY15184
UniProt:
A0A1J0N1Y2
LinkDB
All DBs
Position
286282..288444
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AA seq
720 aa
AA seq
DB search
MSKQTFTTTFAGKPLVVEIGQVAKQANGATVVRYGESTVLTAAVMSKKMATGDFFPLQVN
YEEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEIQVINTVLSYDE
NASAPMAAMFGSSLALSISDIPFNGPIAGVQVGYIDGQFIINPDKEQLEASLLELTVAGS
KEAINMVESGAKELSEDIMLEALLKGHQAIQELIAFQEEIVAAVGKEKAEVELLQVNADL
QAEIVAKYNADLQKAVQVEEKKAREAATEDVKEAVKAEYEERFAEDENLATIMRDVAEIL
EQMEHAEVRRLITEDKVRPDGRKIDEIRPLDAQIDFLPKVHGSGLFTRGQTQALSVLTLA
PMGETQIIDGLDEEYKKRFLHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPS
LEDFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTV
LTDIQGLEDHFGDMDFKVAGTREGITALQMDIKIAGITPQILEEALAQAKKARFEILDVI
EETIAEPRPELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDDEGTVQI
FSSDQAAINRTKEIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWS
RTANVSDVLELGEEVDVKVIKIDDKGRVDASMKALLPRPPKPEKKAPEVEAKSEDKLKED
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacaaacatttacaacaacttttgcggggaaacccttggttgttgaaattggt
caggtggcaaaacaagcaaatggagcaactgtggttcgttatggcgagtcaacagtctta
acagcagctgttatgtctaaaaagatggcaacgggcgatttcttcccattgcaagtcaac
tatgaagaaaaaatgtatgcagcaggcaaattccctggaggtttcatgaaacgtgagggg
cgtccatcaacagatgcaaccctaactgcccgtttaattgaccgtccaattcgcccaatg
tttgcagaaggatttcgtaatgagattcaagtcattaacaccgttctttcttatgatgaa
aatgctagcgccccaatggcagctatgtttggctcatcattagccctctctatttcagac
attccatttaatggaccaattgctggggtacaagtaggttacattgatggtcaatttatc
atcaacccagataaagaacaattagaagcttcgctattagaattaacagtcgctggtagc
aaagaagccattaacatggttgaatcaggagcaaaagaactctctgaagacattatgctt
gaagcccttcttaaaggacaccaagctattcaagaattaattgctttccaagaagaaatt
gtagcagcagttggaaaagaaaaagcagaagtggaattgcttcaagttaatgctgactta
caggctgaaattgtagcaaaatacaatgcggatttgcaaaaagctgttcaagttgaagag
aaaaaagcacgtgaagcagctactgaagacgttaaagaagctgttaaagctgaatatgaa
gaaagatttgctgaggatgagaacctagcaaccattatgcgtgatgttgctgaaattctc
gagcaaatggaacatgctgaggtacgccgtctcattactgaagacaaagttcgcccagac
ggtcgtaaaattgatgaaattcgtccattggatgcacaaattgatttcttaccaaaagtt
catggttcaggactctttacacgtggtcaaacacaagccttgtcagtcttgaccttggcc
ccaatgggagaaactcaaatcattgatggtttagatgaagaatacaaaaaacgcttcttg
catcattacaacttcccacaatactctgttggggaaacaggacgttatggtgctgctggt
cgtcgtgaaattggacatggtgcacttggtgaacgtgcccttgaacaagttttaccaagc
cttgaagacttcccctatgctatccgtttggtagcggaagttttggaatcaaatggttca
tcatcgcaagcttcaatctgtgcaggaactctggccttgatggctggtggtgtgccaatt
aaagcaccggtagcaggtattgccatgggacttatttcagatgggactaattacactgtt
ttaacagatattcaaggtcttgaagaccactttggtgacatggactttaaagtggctgga
acacgtgaggggattacagcacttcaaatggatattaagattgcaggaatcacgcctcaa
attttagaagaagctctagctcaagctaaaaaagcccgctttgaaatccttgatgttatt
gaagaaacaattgctgaaccacgcccagaattagcaccaacggcaccgaaaattgatacc
atcaaaattgatgtggacaaaattaagattgtcattggtaaaggtggcgaaaccattgat
aaaattattgctgaaacaggtgttaaaattgacatcgatgacgaaggaactgttcaaatc
ttctcaagtgatcaagctgccattaaccgtaccaaagaaattattgctagtcttgttcgt
gaagcaaaagttggtgaagtttaccatgctaaagttgttcgtattgaaaaatttggagcc
tttgttaacctctttgacaaaacagatgcccttgttcatatttctgaaattgcatggagc
cgcactgcaaatgtgtcagatgttctagaattaggcgaagaagttgatgttaaagtcatt
aaaattgatgacaaaggccgtgttgatgcctcaatgaaagccttgttgccacgcccacca
aaacctgagaaaaaagctccagaagtggaagctaagtcagaagataaactaaaagaagac
taa
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