Saccharolobus islandicus REY15A: SiRe_1275
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Entry
SiRe_1275 CDS
T01953
Name
(GenBank) 3' exoribonuclease
KO
K12589
exosome complex component RRP42
Organism
sir
Saccharolobus islandicus REY15A
Pathway
sir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SiRe_1275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sir03019
]
SiRe_1275
Messenger RNA biogenesis [BR:
sir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SiRe_1275
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
SiRe_1275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
TagH_SH3-like
Motif
Other DBs
NCBI-ProteinID:
ADX85342
UniProt:
F0NF62
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All DBs
Position
1214350..1215177
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AA seq
275 aa
AA seq
DB search
MSSTPSNQNIIPLIKKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGT
TMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRD
SKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGF
RVNKNEVVGKLPLNHPVVTVSIAKIDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQK
SGKGSMSLQDIDQAENTARLVAVKLLEELKKQLGI
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttcaactccatcgaatcaaaatattatacctttaatcaagaaggaaagtatagta
agtctttttgagaaaggcactaggcaagacggaagaaaattaacggattatagacctctt
tctataaccctggattatgcaaaaaaggctgatggttctgcgttagttaagttaggcacg
acaatggtattagctgggacaaaacttgaaatagataaaccttatgaagatacgcctaac
caaggaaacctcattgtgaatgttgaactcctacctttagcctatgagacctttgaacct
gggcctccagatgagaatgctattgaattagctagagtagtagatagaagtttaagggat
tctaaagctctagatctaactaaacttgtaatagaacccggtaaaagtgtatggacagta
tggcttgatgtttacgtattagactatggtgggaatgtattggatgcatgtacgttggcc
tcagttgcagcattgtataatactaaagtgtataaggtagaacaagattctaatgggttt
agagtcaataaaaatgaagttgtgggtaaattaccattgaatcatccagtagttacagtg
tctatagcaaaaattgacaaatatttaatagttgatccagatttggatgaagagtcaata
atggacactaaggtttccttttcctatacgccagatctaaaaatagtggggattcaaaag
agtggaaagggcagtatgtcattacaagatattgatcaggctgagaatacagcaagatta
gtagctgtcaagcttttagaagaacttaaaaagcagttaggaatttaa
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