Ruegeria sp. TM1040: TM1040_0027
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Entry
TM1040_0027 CDS
T00359
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sit
Ruegeria sp. TM1040
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sit03016
]
TM1040_0027
Enzymes [BR:
sit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
TM1040_0027
Transfer RNA biogenesis [BR:
sit03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
TM1040_0027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
RNase_T
Ig_TMEM131_2
Motif
Other DBs
NCBI-ProteinID:
ABF62760
RoseoBase:
TM1040_0027
UniProt:
Q1GKQ6
LinkDB
All DBs
Position
complement(26757..27371)
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AA seq
204 aa
AA seq
DB search
MATHLYQHDLPNSLDLGPVVAIDCETMGLNPHRDRLCVVQMSSGDGDAHLVQIAKGQTDA
PNLTAMLTNPDVLKLFHYGRFDIAALYHRFGALAAPVYCTKIASRLVRTYTDRHGLKNLT
QDLLGQDISKQQQMSDWGAETLTRAQMDYAASDVLHLHRLRDALDQRLVREGRSDLAQAC
FDFLPTRARLDLAGWPDTDIFAHS
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
gtggccacgcatctttaccaacacgatttgccaaattccctcgatctcggacctgtggtg
gcaattgactgcgaaaccatggggctcaaccctcatcgcgatcgtctctgcgttgtgcag
atgtcgagcggtgacggcgacgcgcatcttgtgcagatcgcaaaggggcaaaccgacgct
ccgaacctgaccgcgatgcttaccaacccggatgtgctcaagctgtttcactacgggcgc
tttgacatcgcggcactataccatcgctttggagcgctggcggcgccggtctattgcacc
aagatcgccagccgtctggtgcgcacctatacggatcgtcacgggttgaaaaacctgacc
caagacctgctcggccaagacatctccaaacagcagcaaatgagcgactggggcgcggaa
acactcacgcgggcgcaaatggattatgccgcctcggacgttctacatctgcaccgattg
cgcgacgcccttgatcaacgccttgtgcgcgaggggcgtagcgaccttgcccaggcctgt
tttgactttctaccgacacgggcgcgactggatttggccggctggccagacaccgatatt
ttcgcccattcctga
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