Ruegeria sp. TM1040: TM1040_0113
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Entry
TM1040_0113 CDS
T00359
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sit
Ruegeria sp. TM1040
Pathway
sit00061
Fatty acid biosynthesis
sit00071
Fatty acid degradation
sit01100
Metabolic pathways
sit01212
Fatty acid metabolism
sit02024
Quorum sensing
sit04146
Peroxisome
Module
sit_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
TM1040_0113
00071 Fatty acid degradation
TM1040_0113
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
TM1040_0113
09145 Cellular community - prokaryotes
02024 Quorum sensing
TM1040_0113
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sit01004
]
TM1040_0113
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sit04147
]
TM1040_0113
Enzymes [BR:
sit01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
TM1040_0113
Lipid biosynthesis proteins [BR:
sit01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
TM1040_0113
Exosome [BR:
sit04147
]
Exosomal proteins
Exosomal proteins of breast milk
TM1040_0113
Exosomal proteins of breast cancer cells
TM1040_0113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
ABF62846
RoseoBase:
TM1040_0113
UniProt:
Q1GKH0
LinkDB
All DBs
Position
119466..121451
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AA seq
661 aa
AA seq
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MSQTAAQTSSGAGQLMSVPALLERNATVHANRPAYREKEFGIWQSWTWKETAEEIEALAL
GLMNLGVAEGDFIAIIGRNRPSLYWSMVAAQSVGAVPVPVYQDSSAEEMAYVLDHCGAAY
VIAGDQEQVDKVLEVQDTLTNLKHMIYVDPKGLRKYDHHQLHQYSHVQEQGRAARDELSS
DLAARKAKLTYDSTCVMLYTSGTTGRPKGVVLSNRNVIESAKNASTFDKLTENEDILSYL
PMAWVGDFIFSLGQSYWCGFCVNCPESEDTMMTDLREIGPTYFFAPPRVFEGQLTNVMIR
MEDAGKLKQKMFHHFLAHAKKVGGLILDGKPVGMMDRLKYRLGDLLVYGPLKDTLGYGRI
RVGYTAGEAIGPEIFDFYRSLGINLKQLYGQTEATVFITVQPDGEVRADTVGVPAPDVEI
KIDDKGEIHYRSPGTFVEYYKNAESTASTKDAEGWVATGDAGFIEESSGHLRIIDRAKDV
GKMASGAMFAPKYVENKLKFYPDILEAVLFGNGRDRCVAFINIDLTAVGNWAERNNIAYA
SYQELAGHPRVLETIRNHVEAVNVSVAQDEMLSGCQVHRFVVLHKELDADDGEMTRTRKV
RRRIVEEKFADIIAALYDGSEQISTRTEVTYEDGRKGAISATLTCVDAKVQSPMAQQVAA
E
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
gtgtctcagaccgctgcgcagacatcgtctggcgccgggcagcttatgtctgttccggcc
ctgctggagagaaacgcaactgtccatgccaaccgcccggcctaccgggaaaaagagttt
ggcatctggcaaagttggacctggaaagaaaccgccgaggaaatcgaggcgctggcgctt
gggttgatgaatcttggtgtggccgagggagatttcattgctatcatcggacgcaaccgg
ccatcgctctattggtcgatggtggcggcacagagcgtcggtgcagtgccggtgccggtc
tatcaggactcaagtgccgaggagatggcctatgtgctggatcactgcggtgcggcctat
gtgattgcgggcgatcaggaacaggtcgacaaggtgctggaggttcaggacacgctgacc
aacctcaagcatatgatctatgtggaccccaagggtctgcgcaaatacgaccaccaccag
ctgcatcaatacagccacgtgcaggaacagggccgcgccgcgcgcgatgagctcagctcg
gatcttgcggcgcgtaaggcgaagctcacgtatgatagcacctgcgtgatgctctatacg
tcgggcaccacggggcgccccaagggcgttgtgctgtccaatcgcaacgtgatcgagagc
gccaagaacgccagcacctttgacaagctcaccgagaatgaagacatcctgtcctacctg
ccaatggcttgggtcggggatttcatcttctcgctgggacagtcctactggtgcgggttc
tgcgtcaattgccccgagagcgaagacaccatgatgaccgatctgcgtgagatcggccca
acttatttctttgcaccgccgcgcgtgtttgagggtcagctcaccaatgtgatgatccgc
atggaagacgcgggtaagctcaagcagaagatgtttcatcacttcttggcccatgccaag
aaagtcggcggcctgatcctggatggcaaacctgtcggcatgatggatcgcctgaagtat
cgccttggggatctcttggtttacggtcccctgaaggatacgcttggctatggtcgcatt
cgcgtcggctacaccgccggtgaggcgattggaccggagatttttgatttctaccgctcg
ctggggatcaatctcaaacagctttatggtcagacagaggccacggtgttcattactgtg
cagcctgatggcgaagtgcgcgcggatacggtgggcgtgcccgcaccggatgtggagatc
aagatcgacgacaagggtgagatccactaccgctcgccggggacctttgtggaatactac
aagaatgcggaatccaccgcttcgacaaaggacgccgagggctgggtcgccacgggtgat
gcgggctttatcgaggaaagctccggccatctgcggatcatcgaccgcgccaaggatgtc
ggcaaaatggccagcggcgcgatgtttgcgcccaagtacgtcgagaacaagctgaagttc
tatcctgacattctcgaggccgtgctatttggcaacggccgggatcgctgtgtggccttt
atcaacatcgacctcacggcggtgggcaactgggcagagcgcaacaatattgcctacgcc
tcctatcaggagctcgcaggccacccgcgcgtgctggagaccatccgcaaccatgttgag
gcggtgaatgtctcagtcgcgcaggatgagatgctgtctggctgtcaggtgcatcgcttc
gtggtgctacacaaggagctcgatgccgatgatggcgagatgacccgcacccgcaaggtg
cgccgtcgcatcgtcgaggagaaattcgccgacattattgccgcgctttatgatggttcc
gagcagatctcgacccggaccgaagtgacatatgaagacggtcgcaaaggcgcgatcagt
gcaacgctgacctgtgtggatgcgaaggtgcaatcgcccatggcgcagcaggtggcagcg
gaatga
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