Ruegeria sp. TM1040: TM1040_0144
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Entry
TM1040_0144 CDS
T00359
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
sit
Ruegeria sp. TM1040
Pathway
sit03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TM1040_0144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sit03400
]
TM1040_0144
DNA repair and recombination proteins [BR:
sit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TM1040_0144
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TM1040_0144
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
Kinesin
UB2H
AAA_22
AAA
DUF87
Microtub_bd
eIF3_p135
Motif
Other DBs
NCBI-ProteinID:
ABF62877
RoseoBase:
TM1040_0144
LinkDB
All DBs
Position
156843..159035
Genome browser
AA seq
730 aa
AA seq
DB search
MPYAHSDKTLPMMADRAPERREKLEGGKKFVMQTAFSPAGDQPTAIAELSQGVLDGERDQ
VLLGATGTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSFYDY
YQPEAYVPRSDTYIEKESQINEQIDRMRHSATRALLERDDVIIIASVSCIYGIGSVETYS
AMTQDLIVGQDYDQRQIMADLVAQQYKRNDQAFQRGAFRVRGDTLEIFPAHLEDRAWKLS
FFGEELESITEFDPLTGERTGSFEKIRVYANSHYVTPKPTLNQAVISIKNELRQRLDNLV
SEGKLLEAQRLEQRTNFDIEMLEATGHCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIV
FADESHVSVPQIGGMYKGDHRRKMTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSAT
PAAWEMEQSGGVFAEQVIRPTGLLDPEVEIRPVGMQVDDLLDEIRDVTARGYRTLATVLT
KRMAEDLTEYLHEQGIKVRYMHSDIDTIERIEILRDLRLGAFDVLVGINLLREGLDIPEC
GLVAILDADKEGFLRSETSLIQTIGRAARNSEGKVIMYADRITGSMERAIAETNRRREKQ
IAYNEEHGITPETVKKNVDDVLAGLYEGDTDMSRVTATIDKPLHGANFEAHLDGLREQMR
KAAENLEFEEAARLRDEVKRLEAVDLAIADDPLARQSAVEAAAEEATRTRGRSTAGKAGQ
RGGNVKRRGR
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgccttacgctcattccgacaagaccctgccgatgatggccgatcgcgccccggagcgg
cgcgagaagctcgaaggtgggaagaaattcgtcatgcagacggccttttctccggcaggc
gaccagcccaccgcaattgccgaattgagccagggtgtgctcgatggagagcgcgatcag
gtattgcttggggcgactggcaccggcaagaccttcaccatggccaaggtgattgaggaa
acccagcgccccgccatcatccttgcgcccaacaaaacgctggcagcgcagctttacggt
gagttcaaagggttctttcctgacaacgcggtcgagtatttcgtctcattctacgattac
tatcagcccgaggcctatgtgccacgttcggacacctacatcgagaaagaaagccagatc
aacgagcagatagaccggatgcggcattcggctacgcgggccctgctggagcgcgacgat
gtgatcatcatcgcctcggtgtcctgtatctacggtatcggttcggtggagacctattcc
gcgatgacgcaggatctgattgtcgggcaggactatgaccagcgccagatcatggcggat
ctggtggcgcagcagtacaaacgcaacgatcaggcgtttcaacgtggcgcgttccgggtg
cgcggcgacacgctggagattttccccgctcaccttgaggaccgggcttggaagctgtcg
ttttttggcgaggaactggagtcgatcaccgagtttgacccgctcaccggcgagcgtacc
gggagctttgagaaaatccgcgtctacgcgaattcgcactatgtgacaccaaagccgacg
ctcaatcaggcggtgatttcgatcaagaacgagctgcgccagcggctcgacaatctggtg
agcgaaggcaagcttctggaagcgcagcggctggagcagaggaccaatttcgacatcgag
atgctggaggccaccgggcattgcaatgggatcgagaactactcgcgctatctgacggga
cgcgcgccgggagagccaccgccaaccctgtttgaattcatccccgacaacgccatcgtg
tttgcggacgagagccacgtctccgtgccgcagattggcggcatgtacaaaggcgaccac
cgccgcaagatgacgctcgcagagcatggtttccgtttgccgtcctgcatggacaaccgg
cctttgaagttcgaagaatgggacgcgatgcgcccgcagtcggtctttgtatcggccacg
cctgccgcatgggaaatggagcaatccggcggcgtgtttgcggagcaagtcatccgacca
accggcctactcgatccagaggtcgagatccgtccggtggggatgcaggtggatgacctc
ctcgatgaaatccgcgatgtcaccgcgcggggataccggacgctggccacagttttgacc
aaacgcatggcagaagatctcacagagtatctgcacgaacagggtatcaaggtgcgctat
atgcactcggatatcgacaccatcgagcgcatcgagatcctgcgcgatctccggcttggg
gcctttgacgttcttgtggggatcaacctgctgcgcgaggggctcgatattcccgagtgt
ggattggtggccattctggatgcggacaaggagggcttcctgcgctctgaaacctcgctc
atccagaccatcggtcgggcggcgcgaaactccgagggcaaggtcatcatgtacgcggat
cgtatcaccggctcgatggagcgcgcgatcgctgaaaccaaccgccgtcgtgaaaagcag
atcgcctacaacgaagaacacggtatcacgccggagacggtgaagaagaatgtcgatgac
gttctggccgggctctatgagggcgacacggacatgtcccgggtcaccgccaccatcgac
aaacccttgcatggtgccaatttcgaggctcatcttgatggtctgcgcgagcagatgcgc
aaggcggcagagaacctcgaattcgaggaagccgcacgcctgcgcgatgaggtcaagcgt
ttggaggcggtggatctggcgattgcggacgacccgctggcgcgccagtctgctgtcgaa
gccgccgccgaagaagcgacccgcacgcgcggtcgctccaccgcgggcaaggccggacag
cgtggcggcaacgtaaagcgccgggggcggtaa
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