Ruegeria sp. TM1040: TM1040_0223
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Entry
TM1040_0223 CDS
T00359
Name
(GenBank) hypothetical protein
KO
K12976
lipid A 3-O-deacylase [EC:3.1.1.-]
Organism
sit
Ruegeria sp. TM1040
Pathway
sit00540
Lipopolysaccharide biosynthesis
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
TM1040_0223
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
sit01005
]
TM1040_0223
Lipopolysaccharide biosynthesis proteins [BR:
sit01005
]
Lipid A
TM1040_0223
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Gene cluster
GFIT
Motif
Pfam:
PagL
Motif
Other DBs
NCBI-ProteinID:
ABF62956
RoseoBase:
TM1040_0223
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Position
complement(238456..238968)
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AA seq
170 aa
AA seq
DB search
MRKIIIAATLISTLLQSHALRAQELTFGLGHAEFNNEIAESGAYFSAEYLGPRDWQVWGF
DAGLGVAGHIHETGDVFFGGGLQAQRDIGRGWFIEASLMPGLYFENEARNDLGSNFEIRS
LIGIGRDLRGGKRLSLALTHMSNASLARENPGLNTITLRLHMPLGQRALN
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaaaatcatcattgctgctactttgatttctacactccttcagagccacgcgctc
cgggctcaggagctgacgttcgggctgggccatgcggaattcaacaatgagatcgccgag
agtggcgcgtatttctccgccgagtacctcgggccacgcgactggcaggtctggggcttt
gacgctgggctgggcgtcgcaggccacatccacgagacgggtgatgtgttttttgggggc
gggctgcaggcccagcgcgatatcgggcgcggctggttcatcgaagccagcctgatgccc
ggtctctacttcgagaatgaggcccgcaatgatctggggtccaactttgaaatccgttcg
ctgatcggcatcgggcgcgacctgcgcgggggcaagcgcctgtcactggcgctcacgcat
atgtccaacgcctctctggcgcgtgaaaacccgggcctcaatacgatcaccctgcggctg
catatgccgcttgggcaacgcgcgttgaactaa
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