Ruegeria sp. TM1040: TM1040_0927
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Entry
TM1040_0927 CDS
T00359
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sit
Ruegeria sp. TM1040
Pathway
sit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TM1040_0927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sit03019
]
TM1040_0927
Enzymes [BR:
sit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TM1040_0927
Messenger RNA biogenesis [BR:
sit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TM1040_0927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
ERCC3_RAD25_C
HEM4
DEDD_Tnp_IS110
SUa-2TM
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABF63660
RoseoBase:
TM1040_0927
LinkDB
All DBs
Position
complement(989796..991133)
Genome browser
AA seq
445 aa
AA seq
DB search
MTEFSSMDLPKHLHTRMEAMGFNTPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPL
VAQMLEYGRKPAAGTVRGLILAPTRELANQIAETLRGLTEGSPLKTGLVVGGVSINPQIH
RLSKGTDILVATPGRLLDILDRKALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEE
RQTMLFSATMPKQMNEIANAYLKSPVRIEVTPPGKPAAKVTQSVHFIAKAEKLSLLKELL
SAHDGERTLVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKSQGQRERALKAFKSGEITVLV
ATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEIGDLKAI
QKTMGITIPVASGRAWEELPDPAAKPARGGGRGRPGGGGGGRGKGGGKPGGGRRRFGGGK
SAAPSGGAGESRGAAGAGGRQRRKS
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaattctcctctatggaccttcccaagcacctgcacacccgcatggaagcgatg
gggttcaatacacccaccccgattcaggcgcgcgccattccccatgcgctgaatggtcag
gacgtgttgggcctggcccagaccggcaccggcaagaccgcggcctttggcgtgccgctg
gtggcgcagatgctcgaatatggtcgcaagcctgcggccggtacagtgcgcggcctgatc
ctcgctccgacccgcgagctggccaatcagatcgcagagaccctgcgcggtctcaccgaa
ggcagcccgctgaagaccgggctcgtcgtgggcggcgtgtcgatcaacccgcagatccac
cgcctgtccaaaggcaccgacattctggtggccacccccggccgactgctcgacatcctc
gaccgcaaggcgctggatctggggtcttgcgactttcttgttcttgatgaggccgatcaa
atgctcgacctcgggttcatccacgccctgcgcaagatcgcggccctcctgcccgaagag
cgccagaccatgctgttctcggccacgatgcccaagcagatgaacgagatcgcaaacgcc
tatctcaagagccccgtgcgcatcgaagtgacccctccgggcaaacccgccgccaaggtc
acacaatcggttcatttcatcgccaaggcggaaaagctgagccttctcaaagagctgctc
tctgcccatgatggcgagcgcacgctggtctttggccgcaccaaacatggcatggaaaag
ctgatgaaggtgctggacaaggcaggcttcaaggcagcggcgatccacggcaacaagagc
cagggccagcgcgagcgcgcgctgaaagcgttcaaatcgggcgaaatcaccgtgcttgtg
gccaccgatgtggccgcgcgcgggcttgatattcccgatgtgaaatacgtctacaactac
gagctgcccaatgtgccggatgcctatgtgcaccgcatcggtcgcaccgcacgtgcaggc
aaagacggtcaggccgtcgccttctgtgcgccggatgagattggcgatctgaaggcgatc
cagaaaaccatgggcatcaccatccccgtggcctctggtcgcgcctgggaagagctgccg
gaccccgcagccaaacccgcacgcggtggcggacgcggtcgccccggcggcggcggcggt
ggccgtggcaaaggcggtggcaagcctggcggcggtcgtcgtcgctttggcggtggcaaa
tccgcagccccctcggggggcgcaggcgaatcccgtggtgccgctggtgcgggtggacgg
cagcggcgcaagtcctga
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