Ruegeria sp. TM1040: TM1040_1218 Help Entry TM1040_1218       CDS       T00359                                  Name (GenBank) Peptidoglycan-binding domain 1   KO K21470   L,D-transpeptidase YcbB Organism sit  Ruegeria sp. TM1040 Brite KEGG Orthology (KO) [BR:sit00001]  09180 Brite Hierarchies   09181 Protein families: metabolism    01002 Peptidases and inhibitors [BR:sit01002]     TM1040_1218    01011 Peptidoglycan biosynthesis and degradation proteins [BR:sit01011]     TM1040_1218 Peptidases and inhibitors [BR:sit01002]  Cysteine peptidases   Family C82    TM1040_1218 Peptidoglycan biosynthesis and degradation proteins [BR:sit01011]  Peptidoglycan biosynthesis and degradation   Transpeptidase    TM1040_1218 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Scaffold YkuD PG_binding_1 TOH_N Motif Other DBs NCBI-ProteinID:  ABF63951 RoseoBase:  TM1040_1218 UniProt:  Q1GHB5 LinkDB All DBs Position 1308297..1309919 Genome browser AA seq 540 aa AA seqDB search MPLARAPKFASFVTGGILAAVLGTTLLFAEKAEAASTGFRQAVAEMAWEDEAVSSYYRQN QYAPLWTADTPEATARRRALMQALEEASMHGLPDMSARAADLVEQMRNVRSTRDLGAVEV ALSRALVDYATDLQTGLIDTPVRIDEGIVREKHKVDATRFLEGIATDRPAAFLQDLVPTS SQYRALLREKMRLEALLQAGGWGATVPVRKIEPGDTGQSVLALRNRLVSMGYLAPTATRS YDLDVEDAVRRFQSEHGLEVDGVAGEGTLKELNRPVSDRIKSVLVAMERERWLTPERGLR HILVNLTDFSAKIMDEGEISFETRSVIGSTKSDRRTPEFSDEMDHMVINPSWYVPRSIIT KEYLPKLKNNPNAHSYIEITDNRGRVVNRNNVDFSQFTARSFPFAMRQPPSSRNALGLVK FMFPNKYNIYLHDTPQKHLFGREVRAFSHGCVRLHQPFEFAYELLTPQTENPKDYFHRVL NSGKETKVPLETKVPVHLIYRTAFVSQDGRAEFRRDVYGRDAKIWSALERAGVALPGVQG NT seq 1623 nt NT seq  +upstreamnt  +downstreamnt atgccgctggctcgcgccccgaaatttgcttcgttcgtcactggtggaattcttgccgcc gttctggggacgaccctgctttttgctgaaaaggccgaggcggcgagcaccgggtttcgc caagcggttgccgagatggcgtgggaggacgaggcggtctccagctattaccgtcaaaac caatacgcccccctttggaccgcagacacaccagaggcgacggcgcggcgccgtgccctg atgcaggcgctcgaagaggcctccatgcatgggctgcctgatatgtcggcgcgggcggcg gacctcgttgaacagatgcgcaacgtccgttccacccgcgatcttggcgcggtcgaggtt gctctgagccgggccctggtggactacgcaacggacttgcagaccggtctgatcgacacg cccgtccgcattgacgaaggcatcgtgcgggaaaagcacaaggtggatgcgacgcgtttc ctcgaggggattgcgaccgatcgcccggcagccttcctgcaggatcttgttccgacctcc tctcaatatcgtgctctgctgcgcgagaagatgcggcttgaggcgctgctgcaggctggc ggctggggcgcaaccgttcccgtgcgcaagatcgagccgggcgacacgggccagagcgtg cttgccctgcgcaacaggctggtgtcgatgggctacctggcgcccacggcgacacgcagc tatgaccttgatgttgaggacgccgtacgccggttccagtctgaacatggcctcgaggtc gatggcgtcgcaggcgagggcacactcaaggagctgaaccgcccggtttcggatcggatc aagtcggttctggtcgccatggagcgcgaacgctggctcacccctgagcgcggcctgcgt catatccttgtgaatctcacggatttctcggccaagatcatggatgagggtgaaatctcc tttgagacgcgctctgtgatcggcagcaccaaaagcgaccgccgcacgccagagttctcg gacgagatggatcatatggtgatcaacccgagctggtatgtcccgcgctcgatcatcacc aaggaatatctgcccaaactcaagaataaccccaacgcccacagctacatcgagatcacc gataatcggggtcgggtggtcaatcgaaacaacgtggactttagccagttcaccgcgcgc agctttccgtttgccatgcgccagcctccgagcagccgaaatgcgcttggtctggtcaag ttcatgttcccgaacaaatacaacatctacctgcatgacaccccgcaaaagcatctcttt ggccgcgaggtgcgcgccttttcgcatggctgcgtccgtctgcatcaaccctttgaattt gcgtatgaactcttgacgcctcagacggagaacccaaaggactacttccaccgggtgctg aacagcggcaaggaaaccaaagtgccgctggaaaccaaggtgccggtgcatctgatctat cgcaccgcctttgtgtcgcaggatggccgcgccgaattccgccgcgatgtctacggacgt gacgcaaagatctggtccgctttggagcgggcaggggtggcacttcccggcgttcaaggc taa

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