Ruegeria sp. TM1040: TM1040_1441
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Entry
TM1040_1441 CDS
T00359
Symbol
phrB
Name
(GenBank) Deoxyribodipyrimidine photo-lyase type I
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
sit
Ruegeria sp. TM1040
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sit03400
]
TM1040_1441 (phrB)
Enzymes [BR:
sit01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
TM1040_1441 (phrB)
DNA repair and recombination proteins [BR:
sit03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
TM1040_1441 (phrB)
Prokaryotic type
TM1040_1441 (phrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
ABF64174
RoseoBase:
TM1040_1441
UniProt:
Q1GGP2
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All DBs
Position
complement(1538768..1540192)
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AA seq
474 aa
AA seq
DB search
MADTRPVIWWIRRDLRLRDNPALRAAQEAGGPIIPLYIHDAQEEALGAAPKFRLGLGLER
FAKTLEEKGSRLIVRRGDALEVLREVIAESGAGHVIWSRLYDPAATKRDAKIKEALKASD
IKAKSTGGRLLFEPWTVDTKDGGMYRVYTPFWKAVRTRDVAELTAAPSRLAAPESWPSGE
ALADLGMDAAMRRGGAIVAQHCRVGEDAALAQLDDFLTERVSNYKAHRDFPARAATSELS
ENLAWGEISPHRMWHLGAQAMQDGQPGAEHFLKEVVWREFAYHLMHRSPRILTRNWREEW
DGFPWQDDPGDALQRWQQGQTGYDFVDAAMRELYVTGKMHNRARMIVASFLTKHLMIHWK
YGLQWFEDCLVDWDPASNAMGWQWVAGSGPDAAPFFRIFNPDGQLEKFDPKGDYARRWLP
EGQANPPETAMAYFEAIPRRWSLHPDQSRVSPIIGLKEGRERALSAYKESRNQS
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggctgacacccgaccggtgatctggtggattcggcgcgacctgcgcctgcgcgacaat
ccagccctcagggccgcgcaggaggcgggcggaccgattatcccgctctatatccatgac
gcgcaagaagaggccctcggggccgcgccaaagttccgccttggcctcgggcttgaacgg
tttgccaaaacgctcgaggagaaaggcagccgtctcatcgtccgccgtggcgacgcactc
gaggtgctgcgcgaggtcatcgcggagagcggcgccggacatgtgatctggtcgcggctc
tacgatccggcggccacaaaacgtgacgcaaagatcaaggaagcactcaaagcgtctgat
ataaaggcaaaatccacgggtgggcggctgctattcgaaccttggaccgtcgacaccaag
gacggcggcatgtaccgggtatatacgccgttctggaaggcagtccgtacgcgcgatgtc
gcggagctgactgccgccccctcccggttggccgcgcccgagagttggccgtcaggtgaa
gcgctcgcggatcttggcatggatgccgcaatgcgtcggggtggcgcgattgttgcgcaa
cattgccgtgtgggagaggacgcagccctcgcgcaactggatgatttcctgacggaacgg
gtttcgaactacaaagcccatcgggattttcccgcccgtgctgccacctcggagctttcg
gaaaatctcgcctggggggaaatcagcccacatcggatgtggcatctgggcgcgcaggcg
atgcaggacggccagcccggcgcggagcatttcctcaaagaggttgtctggcgcgagttt
gcctatcacctgatgcatcgctcgccacgcatcctgacgcgaaactggcgagaggaatgg
gacggtttcccctggcaggacgaccctggcgacgctttgcagcgctggcaacagggacag
accggctatgattttgtcgatgccgcgatgcgagagctctacgtcaccggcaagatgcac
aaccgcgctcggatgatcgtggcaagctttcttaccaagcatctgatgatccattggaaa
tacggattgcagtggttcgaggactgtcttgtcgactgggatcccgcttcgaacgcgatg
ggctggcagtgggtggcgggttccggtcctgatgcggcgcccttttttcgcattttcaac
ccggatggtcagctcgagaagttcgaccccaagggagactatgcgcgtcggtggctgccc
gaaggccaggccaacccgcccgaaaccgcgatggcatactttgaggcgatcccgcgcagg
tggtcgcttcatcccgaccagtcgcgtgtttcaccgattatcggtttgaaagagggccgc
gagcgcgcgctttctgcctacaaagaaagccgcaatcagagctga
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