Ruegeria sp. TM1040: TM1040_1459
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Entry
TM1040_1459 CDS
T00359
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sit
Ruegeria sp. TM1040
Pathway
sit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TM1040_1459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sit03019
]
TM1040_1459
03009 Ribosome biogenesis [BR:
sit03009
]
TM1040_1459
Enzymes [BR:
sit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
TM1040_1459
Messenger RNA biogenesis [BR:
sit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TM1040_1459
Ribosome biogenesis [BR:
sit03009
]
Prokaryotic type
rRNA processing factors
TM1040_1459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ABF64192
RoseoBase:
TM1040_1459
UniProt:
Q1GGM4
LinkDB
All DBs
Position
complement(1557176..1560106)
Genome browser
AA seq
976 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMRARDEEDDEPKPKRRSRSRS
KTRAEKAKTADAVETKEVATPEGEISGMETIDLSDDSTVLAEVPEATSPMETVAETPVEE
PVGDDAAAEMPEADTTDGEAPAGDDSVVAEPATDGEAETVAEDSAAIEEADADDDTDEGG
TEDAPEAKTGGADAADKDDSIESVADDDDQEDIRPPRKPRPKRYKIQEVIKVRQVLLVQV
VKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKDIATELDVPTG
AGLIVRTAGAKRTKAEIKRDYEYLQRMWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYN
REIDEVLVEGERGYRIAKDFMKMIMPSHAKNVKNYQDQLPLFARYQVESYLGGMFNPTVQ
LKSGGYIVIGVTEALVAIDVNSGRATKEASIEETAVKTNLEAAEEVARQLRLRDLAGLIV
IDFIDMDERKNNAAVEKKLKDKLKTDRARIQVGRISGFGLLEMSRQRLRPGMIEATTAPC
PHCHGTGLIRSDDSMALSILRQIEEEGTRRRSREVLVKCPVDIANYLMNQKREHIAQIEA
RYGLSVRIEGDVTLVSPDFSLEKFKTASRAIPAVTTPVVSVDASIMDQVDAIEEVAETPE
EAPAPQAPEADETEGEAKPKRKRRRRRRKKSGNGENGQDADAQASEANASDASDAATDSQ
DAESDSKTETAPDAAGEGDGEAEPKKKRTRTRTRSRSRKKVETEVAAEAEAQDAAPEATP
SEASEAEEAAPAEPAAPAPVEDAAVDEAPVVAAETTASEEATAEEAPSEAPQNTADSQEA
PKAETVVAETTPAPVAAEEAASEEVAPEETPEPVQEETHAEVEPEEAKPEPALAVAEPEP
EEPAKPKRRGWWSVGR
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaaaatgctgatcgacgccacccacgcagaggaaactcgcgttgtggtggtg
gatggaaacaaagttgaggaattcgactttgaatctgaaaacaaacgccagctggctggc
aatatctatcttgcaaaagtaacccgcgtcgagccttcgctgcaggccgcttttgtggac
tatggcggcaaccgccatggcttcctcgcgttttcggaaattcacccggactattaccag
atccccgtcgcggaccgcgaggccctgatggaagaagagcgcgcctatgccgaggcaatg
cgcgcccgcgatgaagaagacgacgaacccaagcccaagcgccgcagccgctcgcgcagc
aagacccgcgctgaaaaagccaagaccgctgacgccgttgaaacaaaagaagtcgccacc
cccgagggtgagatttccggaatggagacaattgacctcagcgatgacagcacggtgctg
gcagaggtgccggaggcgacctcgccgatggaaaccgtagcagagaccccggtcgaggaa
ccggtgggcgatgatgcagcggcagagatgcctgaggcggacacaactgacggcgaagcg
ccagcgggcgacgacagcgtcgtagcagaacccgcgacagatggcgaagccgaaaccgtg
gccgaagactccgccgctattgaagaggcggatgcggacgacgacaccgatgaaggtggc
acagaggatgcgcccgaggcgaaaaccggtggggctgatgcagccgacaaggatgacagc
atcgagtcggttgccgacgacgatgatcaggaagacattcgtccgccgcgcaaaccgcgc
cccaaacggtacaagatccaagaggtcatcaaggtccgtcaggtgctgttggtgcaggtt
gtcaaggaagagcgtggcaacaagggcgctgcgctgaccacttacctgtctcttgcaggt
cgctattgcgttctgatgcccaacaccgcccgtggcggcggcatctcgcgcaagatcacc
aatgccgcagaccgcaagaaactcaaggacatcgcgaccgaacttgatgtgccgaccggg
gcgggactcatcgtgcgcaccgccggggccaaacgcaccaaggcggagatcaagcgcgac
tatgaataccttcagcgcatgtgggagcagatccgcgaactgacgctgaaatccatcgcg
cccgcaaagatctatgaagagggcgacctcatcaaacgctcgatccgcgacctgtataat
cgcgagatcgacgaggttctggttgaaggcgaacgcggctaccgcatcgccaaggacttc
atgaagatgatcatgccgtcccacgccaagaacgtgaaaaactaccaggatcagctgccg
ctctttgcgcgttatcaggtggaaagctatctcggcgggatgttcaatccgaccgttcag
ctgaagtcgggcggctatatcgtgatcggcgtgaccgaggcactggtggcaatcgacgtg
aactccggccgggcaactaaggaagcatcgatcgaggaaaccgcggtcaagaccaacctg
gaggcggccgaagaagtggcgcgccagctgcgtctgcgcgatctcgcgggtctcattgtg
atcgacttcatcgacatggacgagcgcaagaacaatgccgccgtcgagaagaagctcaaa
gacaagctcaagaccgatcgtgcccgtattcaggtgggccggatctccggctttggcctc
ttggaaatgtcgcgccagcgtctgcgtccgggcatgatcgaggcaacaacagcgccttgt
ccgcattgtcacggcaccggacttatccggtcggacgacagcatggcgctgtccatcctg
cgtcagatcgaagaggaaggcacccgccgccggtcgcgcgaagtgctggtaaaatgtccc
gtggacatcgcgaactacctgatgaaccagaagcgcgagcatatcgctcagatcgaagcg
cgctatggcctgtcggtccggatcgaaggcgatgtgaccctcgtcagcccggatttctcg
cttgagaagttcaagacggcatcgcgcgcgatccctgcagtcacgacccctgtggtgtcg
gtggatgcatcgatcatggatcaggtcgatgccattgaagaggttgctgaaaccccggag
gaagcgcctgcgccccaagcccctgaagccgatgaaaccgaaggcgaggcaaagcccaag
cgcaagcgtcgtcgccggcgtcgcaagaagtctggcaatggcgagaacggtcaggacgct
gacgcgcaggcaagtgaggcaaatgcctccgatgcctccgatgcggcgacagactctcag
gatgctgagtcagattccaaaaccgaaaccgcgccggatgccgctggcgaaggcgacgga
gaggcggagcccaagaagaagcgcactcggacgcgcacccgcagccgctctcgcaagaag
gtggaaaccgaggtagctgcagaggcagaggctcaggacgccgctccggaagcgacgcct
tcggaagcctctgaggcagaagaggcagccccagccgaaccggcagcacctgctccggtt
gaggatgcggctgttgatgaggcgcctgttgtcgctgcagagaccactgcatccgaagag
gcaactgcggaggaagcaccctccgaggcaccgcagaacactgcagactcgcaagaggcg
ccgaaggccgagactgttgttgccgagacgacacctgctccggtcgcagcagaagaggcc
gcatctgaagaagttgctcctgaagagaccccggagccggttcaggaggagacccacgca
gaggttgaacccgaagaggcgaagccggaaccggcgcttgcggttgcggaacctgaaccc
gaggaaccggccaagcccaaacggcgcggctggtggtccgtgggtcgttaa
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