Ruegeria sp. TM1040: TM1040_1588
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Entry
TM1040_1588 CDS
T00359
Name
(GenBank) Outer membrane autotransporter barrel
Organism
sit
Ruegeria sp. TM1040
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Gene cluster
GFIT
Motif
Pfam:
HYR
InlK_D3
Big_6
BatD
Motif
Other DBs
NCBI-ProteinID:
ABF64321
RoseoBase:
TM1040_1588
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Position
complement(1696199..1699753)
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AA seq
1184 aa
AA seq
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MPAAAFSFDFGEYHFEYARLGSCDVDLRVDPHREEAFLFLLGVEFQAAGGAELWSGNWHP
MPEVTAENLADCLGVPSSLVEVTRQEGPVFDSDSSESFRLTTYIGLTFDLQTDSMELAAG
TYEFSTDTNGEIRYLGFTDRIAPELTPPSDQSATTDAGQATASLNVTSLGSASDNADSSI
DIAYAIGSTTITGSYDFPVGETTVTMSASDAAGNDATPVTFKVVVSDEESPALTAPSNQE
ITTESGASTASLDVTDLGSVSDNVDSSLSITYYVGSAALSGAYDFPLGDTTVTMMASDAA
GNSAQDTFTVTVNPGDVTAPVLTAPSDQTAATAVGASTAALDVTSLGSGSDNLDDVVTIT
YKVGDTVLDGAYDFPIGETTVTMDATDAAGNAAAPVSFTVTITPGDATAPVLTAPSDQTA
ATAVGASTAALDVTSLGSGSDNLDDVVTITYKVGDTVLDGAYDFPIGETTVTMDATDAAG
NAAAQVSFTVTITPGDATAPVLTAPSDQTAATAVGASTAALDVTSLGSGSDNLDDVVTII
YKVGDTVLDGAYDFPIGETTVTMDATDAAGNAAAQVSFTVTITPGDATAPVLTAPSDQTA
STEPDATSTSLDVTSLGSGSDDIDDSVTIIYKVGDTVLDGAYDFPIGETTVTMDATDVAG
NDAVQVSFVVTVLDGTPPPEPTITDVVVNDDKTLTVTGTAQAGATVTVTFPDGSTVETTA
SGAATSAKGRVNRDSTAVFAAATGTYTATSATPQTSGDVSAYSSTTGGGASASASVAVDA
TSPDVVLSGGPSDGISANESFTVTATFNEVVTGFSASDVVAQNASVTAVTGSGSDYTISL
RATGAGTVTVEVPAGAAEDAASNPTNASNTLVFDDTTVVETQKQIAGFLYNRANQLISNQ
PELIGFLSQTGIGSGTLDAYVTRGAGNFNLASRGGLPVWFRLQGSWSEDDTTEARYAFGA
VGGHLTLSDRLLVGAMLQFDHLHQDQGSRRVEGTGWMVGPYAVAQISDQALYVEGRVLYG
QSSNKVAPFGTYEDSFDTTRVLAQLRVAGDIKKGDTIFTPYIDAAYANEEQDAYVDSLGN
SIGAQKIHLRQASFGVGFATPLPIGAADQAVLTGGLAGVWSSTSGTAVADTVLPSYAGWR
AKLDLGLRYVWENGSKLALSARYDGLGSAGYKDVGLSLDYSLKF
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcggcagccttttcgttcgatttcggcgagtatcattttgaatatgcccggctg
gggtcgtgtgatgttgaccttcgtgtcgaccctcatcgcgaagaggcgtttttgtttcta
ttaggggtggaatttcaagctgcaggtggggcagagctttggagcggaaattggcacccg
atgcccgaagtgaccgctgaaaatctcgctgattgcctgggagtcccatcgtcgctggtt
gaagtcactcggcaggaagggcctgtgttcgattccgatagtagcgagtccttccggctg
acaacctacatcgggttgacgttcgatctgcaaacagactcgatggaacttgccgcgggt
acctacgagttctccactgatacaaatggggagatcagatacctagggttcactgatcgg
attgcgcccgagctgacaccgccaagcgatcagtccgcgactaccgatgcgggacaggcg
acagcgtctttgaatgtgacctcccttggctccgcgtcagataacgcagattcgagcatc
gacatcgcctacgccatcggcagtacgacgatcaccggctcctacgacttcccagttgga
gagacgaccgtgacgatgtctgcgtctgatgctgctggcaatgatgccacgccggtgacg
ttcaaagttgtcgtctccgatgaggaaagccccgccctgactgcgccttccaaccaggaa
atcacgaccgaatcgggggcctctaccgcatcccttgatgttacggacctcggctcggtc
agtgacaacgtagatagcagcctcagcatcacctattatgtcggcagcgccgcgctctcc
ggggcgtatgactttccgcttggcgacaccactgtgacaatgatggcatccgatgccgcc
gggaattctgcgcaggacacattcaccgtgaccgtaaacccgggcgatgtgaccgcgccg
gtcctgacagcgccttcggatcagactgcggcaactgccgtgggggcaagcacagccgcg
cttgatgttacaagccttggttcgggaagcgacaacctcgatgacgtggtgacgatcacc
tacaaggtcggcgacaccgttttggacggcgcctatgacttcccgattggcgagacgact
gtgacgatggatgccaccgatgcggcaggcaatgcggcagcgccagtgtcgtttacagtg
acgatcacccccggcgacgcgaccgcgccggtcctgacagcgccttcggatcagactgcg
gcaactgccgtgggggcaagcacagccgcgcttgatgttacaagccttggctcgggcagc
gacaacctcgatgacgtggtgacgatcacctacaaggtcggcgacactgtgttggacggc
gcctatgacttcccgattggcgagacgactgtgacgatggatgccaccgatgcggcaggc
aatgcggcagcgcaagtgtcgtttactgtgacgatcacgcccggcgacgcgaccgcgccg
gtcctgacagcgccttcggatcagactgcggcaactgccgtgggggcaagcacagccgcg
cttgatgttacaagccttggttcgggcagcgacaacctcgatgacgtggtgacgatcatc
tacaaggtcggcgacaccgtgttggacggcgcctatgatttcccgattggcgagaccact
gtgaccatggatgccaccgatgcggcaggcaatgcggcagcgcaagtgtcgtttacagtg
acgatcacccccggcgacgcgaccgcgccggtcctgacagcgccctcggatcagacggca
tccaccgagccagacgcaacctccacatcgttggacgtcacaagccttggctcggggagc
gacgacatagatgactcggtgacgatcatctacaaggtcggcgacactgtgttggacggc
gcctatgacttcccgattggcgagacgactgtgacgatggatgccaccgatgtggcaggc
aatgacgcggtgcaggtttcttttgtggtcacggtccttgatgggacgccgccgccagag
cctacgatcaccgatgtggtcgtgaatgacgataaaaccctgacggtgacaggcaccgcg
caggccggggcaaccgtcacagtcaccttccctgatggttccacggttgagacaactgcg
tctggcgccgcgacctcggcaaaagggcgcgtgaaccgtgactcaacggcggtctttgcg
gcggcgaccggaacctatacggccacctctgcaaccccgcaaaccagcggcgacgtctcg
gcctattcgtccacaacggggggcggcgcctcggcttccgcttcggttgcggttgatgcg
acttcgcccgatgtggtgctgagcggcggcccgagcgacggcatcagcgccaatgagagc
tttaccgtcaccgcaaccttcaacgaggtagtgacaggctttagcgcgagcgatgttgtg
gcacaaaacgccagcgtcaccgccgtgacagggtcgggcagcgactataccatcagcttg
cgcgcaaccggcgcagggactgtcaccgtcgaagtgcccgcaggagcggcagaggacgca
gcgtcaaacccgacgaatgcctcgaacacgcttgtctttgacgacaccacggttgtggaa
acccagaagcagattgccggcttcctctacaatcgcgccaaccagctgatctcgaaccag
ccagagctcattggtttcctgtcgcagaccgggatcggatcgggaacgcttgatgcctat
gtcacgcggggcgccgggaacttcaatctcgcgtcgcgtggcggtctgccggtttggttc
cgcctgcaaggcagctggagcgaggatgacacaaccgaggcgcgctatgcctttggggcg
gtcggcgggcatctgaccctgagcgatcggctgctggttggggcgatgctccagttcgac
catctgcatcaggatcaaggcagccgccgtgtcgaaggcaccggttggatggtggggccc
tatgcggtggcgcagatctcggatcaggccctctacgtcgaaggacgcgtgctctatggc
caatcctcaaacaaggttgcgccctttggcacctatgaggattcctttgacacaacgcgc
gtcttggcccaactgcgggtcgcgggggacatcaagaagggcgacacgatcttcacgccc
tatatcgacgccgcttacgccaacgaggagcaggacgcctatgtcgacagtctcggcaac
agcatcggggcgcagaaaatccacctgcgtcaggcaagctttggtgtgggctttgccacg
cccctgccgattggcgcagcagaccaagcggtgctgaccggcggtctggcgggcgtctgg
tcctccaccagtggcacggcggtcgcggacacggtgttgccaagctacgcgggatggcgc
gccaaactggacctcggtttgcgctatgtctgggagaacggcagcaaactcgcactctcc
gcgcgctacgacgggcttggcagcgcgggctacaaggacgtcggtctcagcctggattac
agcctgaagttctga
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