Ruegeria sp. TM1040: TM1040_2391
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Entry
TM1040_2391 CDS
T00359
Symbol
gcvP
Name
(GenBank) glycine dehydrogenase
KO
K00281
glycine cleavage system P protein (glycine dehydrogenase) [EC:
1.4.4.2
]
Organism
sit
Ruegeria sp. TM1040
Pathway
sit00260
Glycine, serine and threonine metabolism
sit00630
Glyoxylate and dicarboxylate metabolism
sit00670
One carbon pool by folate
sit00785
Lipoic acid metabolism
sit01100
Metabolic pathways
sit01110
Biosynthesis of secondary metabolites
sit01200
Carbon metabolism
Module
sit_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
TM1040_2391 (gcvP)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
TM1040_2391 (gcvP)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
TM1040_2391 (gcvP)
00670 One carbon pool by folate
TM1040_2391 (gcvP)
Enzymes [BR:
sit01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.4 With a disulfide as acceptor
1.4.4.2 glycine dehydrogenase (aminomethyl-transferring)
TM1040_2391 (gcvP)
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Gene cluster
GFIT
Motif
Pfam:
GDC-P
GcvP2_C
Beta_elim_lyase
Aminotran_5
Motif
Other DBs
NCBI-ProteinID:
ABF65123
RoseoBase:
TM1040_2391
UniProt:
Q1GDZ3
LinkDB
All DBs
Position
complement(2512654..2515503)
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AA seq
949 aa
AA seq
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MPFEPTDYLPYDFANRRHIGPSPEEMAEMLKVVGADSLDALIDETVPQSIRQKAALDFGR
PMSERELLFHMREVAGKNKVMTSLIGQGYHGTVTPPAIQRNILENPAWYTAYTPYQPEIS
QGRLEALLNFQTMISDLTGLEIANASLLDEATACAEAMTMAERVSKSKAKAFFVDRDCHP
QNIAVVKTRAEPLGIEVIVGNPDKMDPEAVFGALFQYPGTYGHVRDFTDHIAKLHEHKGI
AVVSADPMSLTLLKEPGAMGADIAVGSTQRFGVPVGAGGPHAAYMATKDAYKRNMPGRIV
GVSVDAHGNKAYRLSLQTREQHIRREKATSNVCTAQALLAVMASMYAVFHGPKGLKAIAQ
RIHRKAVRLAKGLEEAGFKVDPQAFFDTITVDVGPLQAAVMKSAVDEGINLRRVGETRVG
ISVDETTRPETIEAVWRAFGIVRADDDFTPDYRVPANMHRKSDYLTHPIFHMNRAETEMM
RYMRRLADRDLALDRAMIPLGSCTMKLNAAAEMMPLSWPEFSTIHPFAPADQQAGYGEMV
EDLSKKLCDITGYDAISMQPNSGAQGEYAGLLTIAAYHKARGEGHRNICLIPMSAHGTNP
ASAQMVGWKVVVVKSDERGDIDLEDFRAKAEKHADNLAGCMITYPSTHGVFEETVHEVCK
ITHDAGGQVYIDGANMNAMVGLSRPGDLGGDVSHLNLHKTFAIPHGGGGPGMGPIGVKAH
LVEHLPGHPETGGSEGPVSAAPLGSASILTISWAYCLMMGGAGLTQATKVAILSANYLAK
RLEGAFDVLYKGPTGRVAHECILDTRPFADSADVTVDDVAKRLMDSGFHAPTMSWPVAGT
LMVEPTESETKAELDRFVDAMLSIRDEIKAVESGEMPRENNALKNAPHTMEDLVKDWDRP
YSREQGCFPPGAFRVDKYWPPVNRVDNVYGDRHLICTCPPLEDYAEAAE
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgcctttcgaaccgacagattacctcccgtatgactttgccaatcggcgccacatcggt
ccctcgcccgaggaaatggccgagatgctcaaggtggtcggcgccgacagcctagatgcg
ctgatcgatgagaccgtgccgcaatccatccgtcaaaaagcagcgctggactttggccgc
ccgatgtccgagcgcgagctgctgtttcacatgcgcgaggtcgcaggcaagaacaaggta
atgacctcgctgatcggccaaggctatcacggcaccgtgaccccgcccgcgattcagcgc
aacattcttgaaaatcctgcctggtacacggcctacacgccctatcagcccgagatttcg
caggggcgtcttgaggcactcttgaacttccagaccatgatctctgatctgaccggtctt
gaaatcgccaacgcttcgcttctggacgaggccaccgcctgcgccgaagccatgaccatg
gcggagcgtgtctccaagtccaaagccaaggctttctttgtcgaccgcgactgtcacccg
cagaacatcgcggtggtgaaaacccgcgccgaaccgctaggtatcgaggtgatcgttggc
aaccccgacaagatggatcccgaggctgtctttggtgcattgttccagtatccgggcacc
tatggccatgtgcgcgactttaccgaccacattgccaagctccacgaacacaagggcatc
gctgttgtttctgccgacccgatgtcgctcacgctgctgaaagagccgggtgcgatggga
gcagatattgcggtcggctccacccagcgttttggcgtgcctgttggggcaggggggccg
cacgcggcctatatggcgaccaaagacgcctacaagcgcaacatgccgggccggatcgtc
ggtgtgtctgtcgatgcacatggcaacaaagcttaccgtctgtcgctgcagacccgggag
cagcacatccgccgtgaaaaagcgacctcgaacgtctgcactgcgcaagcgcttcttgcg
gtgatggcgtccatgtatgcggtcttccacggtcccaaaggtctgaaggcgatcgcgcaa
cgcatccaccgcaaggccgtgcgtctggccaaaggcctcgaggaggccggcttcaaagtc
gacccgcaggctttctttgataccattaccgtcgatgttggaccgctgcaggcagccgtc
atgaaatcggcggtggacgaagggatcaacctgcgtcgcgtgggtgaaacccgtgtgggg
atctcggtggatgaaaccacccgccccgaaaccatcgaagcggtttggcgtgcctttggc
atcgtgcgtgcggatgatgatttcaccccggactaccgcgtgcctgcgaacatgcatcgc
aagtcggactacctgacgcacccgatcttccacatgaaccgcgccgagaccgagatgatg
cgctacatgcgtcgccttgcggatcgcgatctggcgctggaccgtgcgatgatcccgctt
ggctcctgcaccatgaagctcaacgcggcagcggaaatgatgccgctcagctggccagag
ttttcgaccatccacccctttgcacctgcggatcagcaggctggctatggcgagatggtt
gaagacctttcgaagaagctctgcgacattaccggctatgatgcgatctccatgcagccg
aactctggcgcgcagggcgaatatgctggcctcctgaccattgccgcctatcacaaggcg
cgcggtgaagggcaccgtaatatctgcctgatcccgatgagcgcccacggcaccaacccg
gcctccgctcagatggttggctggaaagtggttgtggtcaaatccgacgagcgcggcgac
atcgatcttgaggacttccgtgccaaggccgagaaacacgccgacaacctcgcgggctgc
atgatcacctacccatcgacccatggcgtgtttgaggaaaccgtgcatgaggtctgcaaa
atcacccatgatgcgggtggtcaggtctatatcgatggcgccaacatgaacgccatggtg
gggctgagccgtccgggcgatctggggggggatgtgagccacctcaacctgcacaaaacc
tttgccattccgcatggcggtgggggccccggcatgggaccgatcggcgtcaaagcgcat
ctggtcgaacacctcccggggcatcctgaaaccggtggatccgaagggcctgtctctgcg
gcgcccctggggtcggcgtcgatcctgacgatctcctgggcctattgcctgatgatgggc
ggtgcaggtctgacgcaggcgacgaaggttgcgatcctctcggccaactatctggccaaa
cggctcgaaggtgcgtttgacgtgctctacaaaggaccgacaggtcgggttgcgcatgag
tgcattctcgatacgcgtccctttgccgacagcgcagatgtgaccgtggacgatgtggcc
aagcgtctgatggacagcggtttccacgctcctaccatgagctggcccgttgcgggcact
ctgatggtggagccaaccgagtccgaaaccaaggcggaactggatcgttttgtcgatgcg
atgttgtcgatccgtgacgagatcaaagcggtcgagtccggcgagatgccgcgcgagaac
aatgcgctcaagaacgctccgcacacgatggaagatctggtgaaagactgggatcgcccc
tactcgcgcgagcagggctgcttcccgccgggtgctttccgtgtcgacaaatattggccg
cccgtgaaccgcgtcgacaacgtctatggcgaccgtcacctgatctgcacctgcccgccg
cttgaggactacgcagaagcggcagagtga
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