Ruegeria sp. TM1040: TM1040_2559
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Entry
TM1040_2559 CDS
T00359
Name
(GenBank) RNAse III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
sit
Ruegeria sp. TM1040
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sit03019
]
TM1040_2559
03009 Ribosome biogenesis [BR:
sit03009
]
TM1040_2559
03036 Chromosome and associated proteins [BR:
sit03036
]
TM1040_2559
Enzymes [BR:
sit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
TM1040_2559
Messenger RNA biogenesis [BR:
sit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TM1040_2559
Ribosome biogenesis [BR:
sit03009
]
Eukaryotic type
90S particles
RNase
TM1040_2559
Prokaryotic type
rRNA processing factors
TM1040_2559
Chromosome and associated proteins [BR:
sit03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
TM1040_2559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
DND1_DSRM
Motif
Other DBs
NCBI-ProteinID:
ABF65291
RoseoBase:
TM1040_2559
UniProt:
Q1GDH5
LinkDB
All DBs
Position
complement(2702681..2703409)
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AA seq
242 aa
AA seq
DB search
MPSNCALKLFKGPHVKLSRDILAFQARLGHEFSSPELLIRALTHPSVSSPNRQDNQRLEF
LGDRVLGLVMATALLEHDKDATEGQLAPRFNALVRKETCADVARQIDLGAVLKLGRSEML
SGGRRKQALLGDAMEAVIAAVYRDAGFEAAQSVILRLWGKRVGTVEEDARDPKTALQEFV
QARRQPPPAYVLVARKGPDHEPIFTIAARLEDGTEEQATAGSKRLAEQAAAKALLAKLEQ
QT
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
gtgccctcaaattgtgccctcaagctgttcaaaggaccacacgtgaagctatctcgggat
atcctcgcctttcaggcaaggctggggcatgaattttccagcccggagctgttgatccgc
gcgctgacgcatccgtcggtgtcgtctcccaatcggcaggataatcagcggctggagttt
ctcggggatcgtgtgttgggtcttgtcatggcgacggcgcttttggaacacgacaaggat
gccaccgaaggccagctggctccgcgtttcaatgcgctggtgcgcaaggaaacctgcgcc
gatgtagcccggcaaatcgatctgggtgcggtgctgaaactggggcgttcggaaatgctc
tctggcgggcggcgcaagcaggctctgttgggcgacgcgatggaggcggtgatcgccgca
gtttaccgcgatgcaggcttcgaggccgctcaaagcgtgatccttcgcctctgggggaaa
cgtgtgggcaccgtcgaagaagacgcccgcgaccccaaaaccgcccttcaggaatttgtg
caggcgcgacgtcaaccgccgcctgcctatgtattggttgcccgcaaggggccagatcac
gaacctatctttaccatcgccgcccgccttgaggacggcaccgaggagcaggccaccgca
ggctccaaacgcctcgccgaacaggcggccgccaaggccctcctggccaaactggagcaa
cagacatga
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