Ruegeria sp. TM1040: TM1040_2659
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Entry
TM1040_2659 CDS
T00359
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sit
Ruegeria sp. TM1040
Pathway
sit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TM1040_2659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sit03019
]
TM1040_2659
03400 DNA repair and recombination proteins [BR:
sit03400
]
TM1040_2659
Enzymes [BR:
sit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TM1040_2659
Messenger RNA biogenesis [BR:
sit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TM1040_2659
DNA repair and recombination proteins [BR:
sit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TM1040_2659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
Rhodanese
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABF65391
RoseoBase:
TM1040_2659
UniProt:
Q1GD75
LinkDB
All DBs
Position
complement(2793914..2795953)
Genome browser
AA seq
679 aa
AA seq
DB search
MHDAIPLLRDIFGFDDFRPGQEEIVEAVSAGENVLAIMPTGGGKSLCYQLPALRRAGITV
VISPLIALMRDQVRALQEAGVCAGALTSGNTEEETEAVWNAIEAGELKLLYMAPERLAAG
SAMGMLRRIGVSLIAVDEAHCVSQWGHDFRPDYLRIGELRRALDVPLAAFTATADQETQA
EIVQKLFDGEAPRAFLRGFDRPNIHLAFAAKDSPRKQILEFADARRGQSGIVYCGTRAKT
EDIARALEASGHVACHYHGGMEAEDRRIVETRFAREDGLIVVATVAFGMGIDKPDIRWVA
HADLPKSIEAYYQEIGRAGRDGAPAETMTLFGPEDIRLRRNQIDEGLAPPERRGADHARL
NALLGLAEAMSCRRQSLLSYFGENPEPCGHCDLCDTPVETFDGTTAVRKALSAILRTEET
YGAGHLIDILIGNANDRVRQKGHDDLSVFACGREHSKPEWQAIFRQMMGRDLVRPDPERH
GALRMTEPALPILRGEDSITLRKDTIKSATRRPAVKALVSDEDAPLLSALKAKRRALAEA
QKVPAYVIFPDRTLIEMAENRPQSLDEMARISGVGAKKLERYGDAFLSVITGEAEALHPA
RRKLAGRAQGSIYDTLLEVQARLQRGECGTQKPLTCSASQLAKVAQMRSDDESGMERLLG
ERRAQRFASAFLEVLRGAG
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcaatccccctgttgcgcgatatctttggattcgatgactttcgtcccggt
caggaggaaatcgtcgaggccgtgagcgcgggcgaaaacgtgctcgcgatcatgcccacg
gggggtggtaaatccctttgttatcagttgcctgcgctgcgccgcgcggggatcacggtg
gtgatctcgccgctgattgcgctgatgcgcgatcaggtccgcgccttgcaggaggccggg
gtctgtgccggggcgcttacttctggcaatacggaagaagagaccgaggcggtctggaac
gccatcgaggcgggcgagctgaagcttttgtacatggcgcccgaacggttggcggcgggc
agcgccatgggcatgctgcgccggattggtgtctcgctgatcgcggtggacgaggcccac
tgcgtcagccaatggggccatgatttccgcccggattacctgcgcatcggcgagctgcgc
cgcgcgctcgacgtgcccttggcagcctttaccgccacggcagatcaggaaacccaggcc
gagatcgtccagaaactgttcgacggtgaggcgccgcgcgccttcttgcgcggctttgac
cggcccaatattcacctcgcctttgccgccaaggacagcccgcgcaaacagatcctcgag
ttcgccgatgcgcggcgcggccagtcgggcattgtctattgcggcacccgcgccaagacc
gaggacatcgcccgcgcgctcgaggcctctggccatgtcgcctgccattatcacggcggc
atggaggccgaggaccggcgcatcgtcgagacacgtttcgcgcgcgaggatgggctgatc
gtggtggctacggtggcctttggcatgggcatcgacaagcccgacatccgctgggtcgcc
cacgccgacctacccaagagcatcgaagcctattatcaggaaatcggccgcgccggccgc
gatggggcgcccgccgagacgatgacgctctttggtcccgaagacatccgcctgcgccgc
aaccagattgacgaggggcttgcaccgcccgaacggcgcggcgcggatcatgcgcggctc
aacgcattgctggggctggcggaggccatgagttgtcgccgtcagagcctgctgagttat
tttggtgaaaatccagagccttgcggccattgcgatctgtgcgacacgccggttgagacc
tttgacggcaccaccgccgtgcgaaaggcgctctcggccattctgcgcaccgaggagacc
tatggcgcggggcatctcattgacattctgatcggcaacgccaacgaccgcgtgcgccag
aaggggcatgacgatctgtcggtttttgcttgcgggcgcgagcattcaaagcccgagtgg
caggcgattttccggcagatgatggggcgcgatctggtgcggccggacccggagcgtcac
ggggcactcaggatgaccgaaccggcgctgccgatcctgcgtggcgaggacagcatcacc
ctgcgcaaggacaccatcaaatccgccacccgccgcccggcggtcaaggcgctggtctcg
gatgaggatgcgccccttttgtcggcgctgaaggccaagcggcgcgccctcgccgaggcg
caaaaagtcccggcctatgtgatctttcccgatcggaccctcatcgagatggcggagaac
cgcccgcaaagcctggatgaaatggcgcggatttcgggcgtgggcgccaaaaagctcgag
cggtatggcgatgcgtttctcagtgtgatcaccggcgaggccgaagcgctgcacccggcg
cggcgcaagctggcggggcgcgcgcaggggtcgatttacgatacacttctggaggtgcag
gcgcggctgcaacgcggcgaatgcggcactcagaaaccgctgacttgctcggcctcgcaa
ctggccaaagtggcgcagatgcgcagcgatgacgagagcgggatggagcggctgttgggg
gagcgccgcgcgcaacggtttgcctcggcgtttctggaggtcctgcgcggcgcgggctag
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