Ruegeria sp. TM1040: TM1040_2994
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Entry
TM1040_2994 CDS
T00359
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sit
Ruegeria sp. TM1040
Pathway
sit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TM1040_2994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sit03019
]
TM1040_2994
03016 Transfer RNA biogenesis [BR:
sit03016
]
TM1040_2994
Enzymes [BR:
sit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
TM1040_2994
Messenger RNA biogenesis [BR:
sit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TM1040_2994
Transfer RNA biogenesis [BR:
sit03016
]
Prokaryotic type
tRNA degradation factors
TM1040_2994
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
MarR_2
Motif
Other DBs
NCBI-ProteinID:
ABF65726
RoseoBase:
TM1040_2994
LinkDB
All DBs
Position
complement(3160462..3162747)
Genome browser
AA seq
761 aa
AA seq
DB search
MARIPTKAEILEWISAHPTQTSKRDIAKAFGIKGAERIDLKRVLKELEAEGHLEKRKRSY
TDPDRLPPVSVLLVKAPDENGDLFAQPLEWHGEGIEPIVMVIPRASDPALGEGDRILARL
TVVQEEDHNYEARLIRRIGTNPKRILGIFRQGSEGGRIVPIDKASSNEWQVPEANVHGAK
DGELVEAELAGPKARMGLPKARIVERLGDPSAPKAVSLIAIHQHGIPDHFPDAVIAEADS
AKPMGLKGREDLRDLPLITIDPADARDHDDACFAHADEDPMNPGGHVIWVAIADVAAYVT
PGSALDREARKRGNSSYFPDRVVPMLPDRLSGDLCSLHEGVPRPCLAVRLQIDAEGHKIG
HRFVRGLMKSQASLHYGEVQEAMDGKITERTEPFLEDVIKPLYAAYEALKAARAARQPLD
LDLPERKIVLDDKGKVASVNFRDRLDAHRLIEEFMVLANVAAAETLIKKRQPLLFRVHEE
PSQDKLDALRDTAQAAGLNLAKGQVLQTRHLNALLNAAAGTDDAELINISTLRSMQQAYY
YPENFGHFGLALRNYAHFTSPIRRYADLIVHRALITAHGWGKDGLSADEIERLEDTATHI
SATERRSMLAERDTTDRYLASYLAERVGNEFSGRISGIARFGAFVKLDETGADGLVPVRS
IGQEYFHFDAQAGTLMGSDTGLLITIGQRVTVRLTEAAPVTGGLELELLALEGADLPKGR
GGSRKGGRRRSPAGRTMTRSKAAKSKTKADKIKRKVTRKRK
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtatacccacaaaggccgagattctggaatggatctccgcccacccgactcag
acttctaaacgtgacattgccaaagcctttggcatcaagggcgcagagcggatcgatctc
aagcgcgtcttgaaggagctggaggcagaagggcatctcgaaaagcgcaaacgcagctac
accgatccggaccgtttgccgccagtctcagtcttgctggtcaaagcgcctgatgaaaat
ggcgatctctttgcgcagccacttgaatggcatggcgaagggattgaaccaatcgtaatg
gtgatcccgcgtgcctcggacccggcgcttggagaaggcgaccggatcctggcgcgcctc
acggtggtgcaggaagaagaccacaattacgaggctcggctgatccggcgcatcggaacc
aatcccaaacgcattctcgggatctttcgtcaaggctcggaaggtgggcggattgtgccc
atcgacaaggccagctcgaacgaatggcaggtgcccgaggccaatgtacacggcgctaaa
gatggcgagttggtcgaagccgagcttgcgggtccaaaggcgagaatgggactgcccaaa
gcccggatcgttgaacgtctgggcgacccctcggcacccaaggcggtatcgctgatcgca
atccatcagcacggcataccagatcactttccagatgcggtgatcgcagaagccgacagc
gccaaacctatggggctcaagggacgtgaagacctgcgggatctgccgctcattaccatc
gacccagccgatgcacgcgatcatgatgatgcgtgctttgcccatgccgatgaggatccc
atgaaccccggaggccatgtcatatgggtcgcaatcgccgatgttgccgcctatgtgaca
cccggctcagcattggatcgcgaggcgcgaaaacggggcaactccagctattttccggac
cgggtggtgcctatgctcccggatcgtctttcgggggatctgtgctcgttgcacgaaggt
gtgccccgcccctgtctggccgttcgcctgcagatcgacgcagagggacacaagataggc
caccgttttgtacgcggtctgatgaaatcgcaggcttcactgcactatggcgaagtgcag
gaggccatggatggtaagatcactgagcgcacggaaccgtttctcgaagacgtgatcaaa
ccgctctatgcagcctatgaagccctcaaggccgcccgcgccgcgcgtcagccgcttgat
ctcgaccttcccgaacgcaaaatcgtcctcgatgacaagggtaaggtcgcctccgtcaat
ttccgcgatcgcttggatgctcatcgcctgatcgaagagttcatggtgcttgcaaatgtc
gcagccgctgaaacactgattaagaagcgccagccgcttttgttccgggtccatgaggaa
cccagccaggacaagcttgatgccttgcgtgacactgcgcaggccgctggtctcaacctt
gcaaaagggcaagtgctgcagacccgacacctgaacgccttgctgaatgcggcggcaggc
acagatgatgcggagctcatcaatatctccacgctgcgctccatgcagcaggcctattac
tatccagagaactttgggcactttggtctggctctgcgcaattacgcgcatttcacctcg
cccatccgtcgctatgcggacctgatcgtacaccgcgccctgattacggcgcatggctgg
ggcaaagatgggctctcggcggacgagattgagcgattagaagatacagcaacgcatatc
tcggcgaccgagcggcgctcgatgctggccgagcgcgacaccacggaccgctatctggcc
tcctacctcgcagagcgtgtgggcaatgagttctccggccggatctccgggatcgcccgt
ttcggggcttttgtgaaactggatgaaaccggcgccgatgggttggtgcccgttcggtcg
atcgggcaggagtatttccattttgatgcacaggccggcacattgatggggtcggatacc
ggtctgttgatcaccattggccaacgcgtgaccgtgcgcctcacagaggccgcgccagtc
accggcgggctcgaattggaactgctggcgcttgaaggcgcagacctgccaaaaggccgt
ggtggaagccgcaaaggcggccgccgccgcagcccggcgggacgcaccatgacccggagc
aaggccgcgaaatccaagaccaaagcagacaagatcaaacgaaaagtaacacgcaagcgg
aagtaa
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