Ruegeria sp. TM1040: TM1040_3285
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Entry
TM1040_3285 CDS
T00359
Name
(GenBank) Outer membrane autotransporter barrel
Organism
sit
Ruegeria sp. TM1040
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HYDIN_VesB_CFA65-like_Ig
Autotransporter
ASH
DUF1573
Cep192_D4
CARDB
Y_Y_Y
Motif
Other DBs
NCBI-ProteinID:
ABF62259
RoseoBase:
TM1040_3285
UniProt:
Q1GM57
LinkDB
All DBs
Position
mega:complement(286135..291822)
Genome browser
AA seq
1895 aa
AA seq
DB search
MIEFLCECVVRDKRCAMTPPVSGYKTGRGPIVKRLSGVFFFIMVSLFVAPQAAQASFTSC
PANTSGGDPLTMNLTVDECTLQSGAAVSALSDDLIQIQIAGGSSTNFFIFDPSANDLRDL
IFSVNNGSPQGTLDADGGSLSGIDCAAGCTVSGTHGGSPFTFTYTASGGGGSLSSPAEID
DLVSSTGNTVADGGTDTIAAAIDSGTPTTITYDVSNSGSGTLSLSGLTQGTPTNASFGAT
SIDAASVASGGTETDAISITFTPSSTTDGASFSVPFSFTTNDADDGTDETTFNVTISGTI
NAEAEISDLTSSTTNTVADGGSDAQGTVASGSAQALIYTITNSGTADLSVATASSSSASN
VTVNSIGAPGSTTVSAGGGTTQFTVQYTPSAAGAFSFDLSFVNSDADEDPFNFTVSGTAT
AAPGFSQAIAPGTILADGTATVTFTIDNSANATAATSLDFSNSLPAGVEVAATPNASTTC
TGGTLTAVAGSGTLSYTGGTVGAGASCTVQADVTAGTDGSYSNTSGDLTSSLGNSGSASA
SLTVASPEIDLQRPAATSLADGDTDAQGNVAVGVQQVLTYTVENTGNATLTLSGTPSSSA
ASNVSVDSISAPGSSSLAASASTTFTVAYTPTAAGAFSFELDVSSDDADEGTYDLTVSGT
ATAAPGFSQAIAPGTILADGTATVTFTIDNSANATAATSLDFSNSLPAGVEVAATPNAAT
SCTGGTLTAVAGSGTLSYTGGTVGAGASCTVQADVTAGTDGSYSNTSGDLTSSLGNSGSA
SASLTVASPEIDLQRPAATSLADGDTDAQGNVAVGVQQVLTYTVENTGNATLTLSGTPSS
AAASNVSVDSISAPGSSSLAASASTTFTVAYTPTAAGAFSFELDVSSDDADEGTYDLTVS
GTATAAPGFSQAIAPGTILADGTATVTFTIDNSANATAATSLDFSNSLPAGVEVAATPNA
ATSCTGGTLTAVAGSGTLSYTGGTVGAGASCTVQADVTAGTDGSYSNTSGDLTSSLGNSG
SASASLTVASPEIDLQRPAATSLADGDTDAQGNVAVGVQQVLTYTVENTGTATLTLSGTP
SSAAASNVSVDSISAPGSSSLAASASTTFTVAYTPTAAGAFSFELDVSSDDADEGTYDLT
VSGTADGSAEIGVGSATGGSLEDGDTDTIPGTPSAGSPTVIIYTFTNSGSGTLNITTPTV
AGNISNETNVVVNSLTLASNTVAGGGGTTTLEISYTPQVSGAYRFDLQVANDDADESLFN
ITVAGSASGLPEIEVSSSASGALSDGDTDSIATVATPGVTASVTYTITNSGTDVLTLDAP
SVASNIRNQSNVTVDRLSLASTTVASGGGTTTLRVDYTATAGGAYGFDLSLGSDDADEDP
FDIVVSGTAQSVASALAAQSGSGQVSEVGAQFPAPLVVLVTDSTGTGVAGVDVTFAAPAS
GASVVFASTGTHTETVTTGSDGTASTSAMTANGTPSSYAGGSTLQSYDVTASATGLASVT
FALTNDRDSEADIQKTQEVIAAFVSNRANAIVSNQPDLVSRLRQGALAGQQGRNGFDLRA
TSGGRSANFSFSLRALLEEARRRNDGARWRETLRHADASAGPGADSAADRAMASQAYALR
FRGTDPAQAAPVVTPVISSGWDFWAEGTYAITESGNFESRSGLFFAGADYRWSDQVLLGV
MGQLDIADEDNVAAGTSASGTGWMVGPYVVVRLDQNLYLDVAATYGRSSNTVNALGLFED
DFDTERFLLQGGLTGDFKLNARTTISPFARLTYYYEKQESYTDTLGRVIPSQDFELGRFE
FGPKISWEMYLQEGTQFSPYVSFSGIYDFNKLQGATPTDATLASSQSDLRGRLEAGATFL
VPDRGIKVAVEGFYDGIGTSDFESYGASLSVLIPF
NT seq
5688 nt
NT seq
+upstream
nt +downstream
nt
atgattgagtttttgtgcgaatgtgtggtgcgcgacaaacgttgcgccatgacacctccg
gtttcagggtacaaaactgggcgggggccgattgttaaacgcctcagtggcgtattcttc
tttatcatggtctcgctttttgtagccccacaggcggcacaagcgtcgtttacgagttgc
ccagccaatacctctggcggtgacccgctgacaatgaatctcactgtggatgagtgcacc
ttgcaaagcggcgcggccgtgtcggcattgtctgacgacctgatacaaattcagattgct
ggaggatcgagcaccaactttttcatctttgacccttcggcaaatgatctccgtgatctg
atattcagcgtcaataacggcagccctcaaggcacgctcgatgcggatggcggcagcttg
tccgggatcgattgtgcggcgggctgcacggtgagcggcacccacgggggatcgccattc
acctttacctacaccgcctcaggcggcggcggatctctgagttctccggctgagattgac
gatctcgtttcctccacgggcaacacggttgcggatggtggaaccgacacgattgcagct
gcaatcgacagcggtaccccgacgaccatcacctacgatgtcagcaacagtggttcgggc
acgctatctctgtctgggttgacacagggcaccccgacgaatgcttcatttggggcgacc
tcaatagatgcggcatccgtggcttcaggcgggacagagaccgatgccatcagcatcaca
tttaccccaagctccaccacggatggtgccagtttctctgttccgttcagtttcacaacc
aacgatgcggatgatggaaccgatgaaaccaccttcaatgtcaccatctccggcacaatc
aatgccgaagccgagatcagcgatctgacctcttcaacaactaatacggttgcggatgga
ggtagcgatgcgcagggcacagtagcctccggaagcgctcaggctctcatctacacgatc
acgaactcgggtacggcggacctcagtgttgcgacggcctcctcgtcaagcgccagcaat
gttaccgtgaattcgattggcgcgccgggcagcacaacggtttccgcaggcggcggcacg
acacagttcaccgtgcaatatacgcccagcgcggcgggggccttctcttttgatctgtca
tttgtgaacagcgatgcagacgaagaccccttcaatttcaccgtaagcggcacggcgacg
gcggcgcctgggttcagccaggcgattgcaccggggacgatccttgcggatgggacggcg
acggtgacctttaccattgacaacagcgctaatgccacggcggcaacgtcgctcgacttt
agcaatagtctgcccgcaggggttgaggtcgccgcaacgcccaatgcgtcgaccacctgt
accggtggcacgctgacggcggtggctggcagcggcacgctctcctataccggtggcacg
gtgggcgcgggcgccagctgcacggtgcaggcggatgtgaccgctggaacggacggcagc
tacagcaacaccagcggcgatctgacctcgagccttggcaattccggcagcgcctcggcc
tcgctgacggtggcctcgccagagatcgatctccagcgcccggcggcaacgtctctggcg
gatggtgacaccgatgcgcagggcaatgttgcggtgggggtgcagcaggtgctgacctac
acggtagagaacaccggcaatgcgacgctcaccctgagcggcacgcccagcagttcggcg
gcgagcaatgtgagcgtggacagtatctctgcacccggctccagcagccttgcggccagc
gccagcaccacctttacggtggcctatacgccgaccgcggcaggggcgttttcctttgag
ctcgatgtgagcagcgacgacgccgacgagggcacctatgatctcaccgtaagcggcacg
gcgacggcggcgcctgggttcagccaggcgattgcgccggggacgatccttgcggatggg
acggcgacggtgacctttaccatcgacaacagcgccaatgccacggcggcaacgtcactc
gacttcagcaatagtctgcctgcgggggttgaggtcgccgcaacgcccaatgccgcgacc
tcctgtaccggtggcacgctgacggcggtggctggcagcggcacgctctcctataccggt
ggcacggtgggcgcgggcgccagctgcacggtgcaggcggatgtgaccgctggaacggac
ggcagctacagcaacaccagcggcgatctgacctcgagccttggcaattccggcagcgcc
tcggcctcgctgacggtggcctcgccagagatcgatctccagcgcccggcggcaacgtct
ctggcggatggtgacaccgatgcgcagggcaatgttgcggtgggggtgcagcaggtgctg
acctacacggtagagaacaccggcaatgcgacgctcaccctgagcggcacgcccagcagt
gcggcggcgagcaatgtgagcgtggacagtatctctgcacccggctccagcagccttgcg
gccagcgccagcaccacctttacggtggcctatacgccgaccgcggcaggggcgttttcc
tttgagctcgatgtgagcagcgacgacgccgacgagggcacctatgatctcaccgtaagc
ggcacggcgacggcggcgcctgggttcagccaggcgattgcgccggggacgatccttgcg
gatgggacggcgacggtgacctttaccatcgacaacagcgccaatgccacggcggcaacg
tcactcgacttcagcaatagtctgcctgcgggggttgaggtcgccgcaacgcccaatgcc
gcgacctcctgtaccggtggcacgctgacggcggtggctggcagcggcacgctctcctat
accggtggcacggtgggcgcgggcgccagctgcacggtgcaggcggatgtgaccgctgga
acggacggcagctacagcaacaccagcggcgatctgacctcgagccttggcaattccggc
agcgcctcggcctcgctgacggtggcctcgccagagatcgatctccagcgcccggcggca
acgtctctggcggatggtgacaccgatgcgcagggcaatgttgcggtgggggtgcagcag
gtgctgacctacacggtagagaacaccggcactgcgacgctcaccctgagcggcacgccc
agcagtgcggcggcgagcaacgtgagcgtggacagtatctctgcgcccggctccagcagc
cttgcagccagcgccagcaccacctttacggtggcctatacgcccactgcggcgggggcg
ttttcctttgaactcgatgtgagcagcgacgacgccgacgagggcacctatgatctcacc
gtaagcggcacggcagatgggagcgcggaaatcggcgttggctcagcgaccggcggcagt
cttgaggatggcgacaccgatacaattcccggcaccccaagtgcgggttcgccgacggtg
ataatctatacgttcaccaactctggctccggcacgctcaatatcacgacgccgacggtt
gctggaaatatctcaaatgaaaccaatgtcgtggtgaacagtttgactcttgcgtccaac
actgtggccggcgggggcggcaccacaacgctggagatctcgtacacgccgcaggtcagc
ggggcctatcgttttgatctgcaggtcgccaatgacgatgcagatgaaagcctgttcaat
attacggtcgcgggttctgcaagcggcctccccgaaatcgaggtgtcttcctcggcaagc
ggtgcgttgagcgatggtgacaccgatagtatcgccacggtcgcgacgcccggcgtcacg
gcgtccgtcacctataccatcaccaacagcggcaccgatgtcttgaccctggatgcgccg
tcggtggccagcaacatccgcaaccaaagcaacgtgacggtggatcgtctcagtcttgca
tcaacaactgtggccagtggcggtgggacaaccacattgcgggttgactatacggccacc
gcaggtggtgcgtatgggttcgacctgagcctgggatcggatgacgcggatgaagacccg
tttgacatcgttgtcagtggcacagcccagagcgtcgcgagcgcgctcgcagctcaatcc
ggatcgggtcaggtctctgaagtgggcgcgcagtttcctgcgccactcgtggttttggtc
acagacagcactggtacaggagtggcgggggtcgatgtgacgtttgccgcccctgcaagc
ggcgcttcggtggtttttgccagtacgggcacccatacagagacggtgaccaccggctct
gatgggacggcgagcacctctgccatgaccgccaatggaacgccctccagctatgccggg
ggatcgacacttcaatcttatgatgtcacggccagcgcgacgggcctcgccagtgtcacc
tttgcgttgaccaatgatcgcgattcagaagcggatattcagaaaacccaagaggtgata
gcggcctttgtttccaatcgcgccaatgccatcgtgtccaatcagcccgatctggtatcg
cggctcaggcaaggtgcgctggcgggccaacaagggcgcaacgggtttgatctgcgggcc
acatcgggtggtcgatccgcgaacttcagctttagtctgcgcgcgttgctggaggaggct
cgtcggcgcaatgacggcgcgcgttggcgcgagacgctgcgccatgcggatgcgagcgcc
gggcccggcgcagactccgcagcagaccgtgcgatggccagtcaggcctatgcgctgcgt
tttcgcggaaccgacccggcgcaagcagcgcccgtggtgacacccgtaatctcatcaggc
tgggatttttgggccgaggggacctacgccatcacggagagtggcaacttcgagagccgg
tcaggcctgttctttgcgggtgcagactaccgctggtcggatcaggtcctgctcggggtc
atggggcagttggacattgccgatgaggacaatgtcgcggccgggacgtcggccagcggt
accggctggatggtcgggccctatgtggtggtgcgcctcgatcagaacctctatctcgat
gttgcggccacctatggtcgatcttccaacacggtcaacgcgcttggtttgttcgaagac
gatttcgatactgaacgtttcttgttgcaaggtggtttgacgggcgatttcaaactgaat
gcgcgcaccacgatcagcccgtttgcgcggctgacctactactatgagaagcaggaaagc
tataccgatacgctcggccgggtgatcccctcgcaggacttcgaacttggtcggttcgag
ttcggtccaaagatttcatgggagatgtatttgcaggagggcacgcaattttcgccctat
gtgtctttttccggcatctatgatttcaacaagctgcagggggcgacaccgacagatgcg
acactggcctcttctcagtcggatctgcgggggcggctcgaagcgggtgccactttcctt
gtgcctgatcgcgggatcaaagttgccgtcgaggggttttatgacgggattggaacgtcc
gactttgaatcctatggtgcgagcctgagtgtcctgatcccgttctga
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