Ruegeria sp. TM1040: TM1040_3312
Help
Entry
TM1040_3312 CDS
T00359
Name
(GenBank) putative periplasmic solute-binding protein
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
sit
Ruegeria sp. TM1040
Pathway
sit02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
TM1040_3312
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sit02000
]
TM1040_3312
Transporters [BR:
sit02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
TM1040_3312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_6
SBP_bac_11
SBP_bac_1
Motif
Other DBs
NCBI-ProteinID:
ABF62284
RoseoBase:
TM1040_3312
LinkDB
All DBs
Position
mega:321168..322187
Genome browser
AA seq
339 aa
AA seq
DB search
MKHIALTVLAATALAAPLTASFASSAQAEDAICYNCPPQWADWASMLEAIETEIGVSLPH
DNKNSGQTFAQLVAEKDSPVADVAYYGVTTGIKAGKEGLVEAYKPAGFDEIPEGLKDPEG
KWFAVHYGTIGFFVNVDALGGAPVPQCFADLKKPAYQGMVGYLDPSSAFVGYAGAVAVNL
SFGGDLQDFDPAIEYFSELAENAPIVPKQTSYARVVSGEIPILFDYDFNAYRAKYEEDGN
FEFVLPCEGSVRVPYVMSLVGNAPHGETGKKVLDFILSDKGQAIWTNAYLQPARPVELPA
EVAEKFLPASDYARAQAVNYAEMEKAQAGFGERYLNEVK
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgaaacatatcgctcttacggttctggctgcaaccgctcttgcggcaccgctgaccgcg
tcttttgcatcttcggcgcaggccgaagacgccatctgctacaattgccccccgcaatgg
gcggattgggcgtccatgctggaggccatcgagaccgagatcggtgtcagccttccgcat
gacaacaagaactccggccagacatttgcacagcttgtggctgaaaaagacagccccgtg
gcagatgtggcctattacggtgtgaccaccggcatcaaggcgggcaaggaaggtctggtc
gaggcgtacaagcccgcaggttttgacgagatcccggaggggctcaaagaccccgaaggc
aagtggttcgcagtgcattacggcaccatcgggttctttgtgaatgtggacgcccttggc
ggcgcgcccgtcccgcagtgctttgcagacctgaaaaagcctgcctatcagggaatggtg
ggttatctggatccctcgtcggcctttgtcggatatgccggggccgtcgccgtcaacctt
tcctttgggggcgatctgcaagactttgaccccgcaatcgagtatttttccgagctggca
gagaacgcaccgatcgtgcccaagcagacgtcttatgcgcgggtcgtatcgggagagatc
ccgatcctgtttgattacgacttcaacgcctatcgcgcgaaatacgaagaagacggaaat
tttgaatttgtcctgccctgcgaggggtcggtgcgtgtaccctatgtcatgagcctcgtg
ggcaatgcgcctcacggcgagaccggcaagaaggttctggatttcattctctctgacaaa
gggcaggcgatctggaccaacgcctatctgcagcccgcgcgcccggttgagctgcctgct
gaggtggcggagaaattcctgcccgccagcgattatgcccgtgcacaggctgtgaactat
gcagagatggaaaaggcgcaggccggttttggcgaacgctacctgaacgaagtcaaataa
DBGET
integrated database retrieval system
