Ruegeria sp. TM1040: TM1040_3370
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Entry
TM1040_3370 CDS
T00359
Name
(GenBank) Deoxyribodipyrimidine photo-lyase family protein
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
sit
Ruegeria sp. TM1040
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sit03400
]
TM1040_3370
Enzymes [BR:
sit01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
TM1040_3370
DNA repair and recombination proteins [BR:
sit03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
TM1040_3370
Prokaryotic type
TM1040_3370
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Ortholog
Paralog
GFIT
Motif
Pfam:
FAD_binding_7
Motif
Other DBs
NCBI-ProteinID:
ABF62342
RoseoBase:
TM1040_3370
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All DBs
Position
mega:complement(381777..383009)
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AA seq
410 aa
AA seq
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MATQEPQIGPATRAEALLRMEAFTPRMGLNYATFRNHDYGPQRQSAVSMLSPYLRRRLLT
EPEVIAAALAAHGPQEADKFVQEVLWRGYFKGWMERRPEVWANYITGRDADFVALEEDPG
LAIRVNAAETGETGLAYFDTWAKELVRTGYLHNHARMWFASLWIFTLKLPWRLGADFFLR
HLLDGDPASNTCSWRWVAGLHTRGKPYVAQASNIARFSGGRFAPQESELATEVTGLMDEE
PEGLPHVNPLRSVLSPEEAKPTAVLLTEEDCMPASADLASLDIRGAARLYCSHLRSPRRV
AAAVSTFEEDALADTVARIGLDAQPWAASEPEALADWVQSIGAQQIFMPYATVGPLGDWI
ARALPLLRARGVAVAEWQRDWDGLVWPHATAGFFKVKKRLPDILTKAGLT
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggcaacacaagaaccgcaaataggccccgcgacacgcgccgaagctctgctgcgaatg
gaggcattcacgccgcgcatggggctcaactacgcgacatttcgcaaccatgactatggg
cctcaacgtcaaagcgctgtgtcgatgttatcgccctatcttcgccgtcgcctcctgacc
gagccggaagtgattgcggcagccttggcggcacacggacctcaggaggcagacaaattc
gtccaagaagtcctgtggcgcggctatttcaagggatggatggagcggcgaccggaggtc
tgggcaaactatatcaccgggcgcgatgcggacttcgtcgcccttgaagaggatccgggg
ttggcgatacgcgtgaatgctgcagaaacgggtgagaccggtcttgcctatttcgatacc
tgggccaaggagctggtgcgcacagggtatctgcacaatcacgcgcggatgtggtttgcg
tcgctttggatcttcacgctcaagctgccgtggcggttgggagcagatttcttccttcga
cacttgctggacggcgaccccgcgtcgaacacttgttcgtggcgctgggtggcaggactt
catacgcggggcaagccctacgtggcgcaagcctcgaatatcgcgcggttcagtggtggg
cgatttgcgccccaggagagtgagctcgcaacagaagtgactggcctgatggacgaagaa
ccagaggggcttccgcacgtgaaccccttgcgatctgtcctctcccctgaagaagcaaag
ccgactgcggttcttttgaccgaagaagactgtatgcctgcgtcagcggatcttgcgtca
ctggatattcggggggcggcacgcctatattgcagtcacctgcgctcgccacgcagggtg
gccgccgccgtgtcaacattcgaggaggatgctctggcagataccgttgcgcgcataggt
ctggatgcacagccctgggcggcgtcggagccagaggcgctggctgattgggtgcagtcg
attggggcgcagcagatcttcatgccctatgcaacggtcggcccgctgggagactggatt
gcgcgggcgctgcctttgttgcgggctcggggggtcgcggtagcggaatggcaacgggat
tgggacgggctggtgtggccacatgcaacggccgggtttttcaaggtcaaaaagcgcttg
cctgacatcctgaccaaggccgggctgacatga
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