Ruegeria sp. TM1040: TM1040_3495 Help Entry TM1040_3495       CDS       T00359                                  Name (GenBank) diaminopimelate decarboxylase   KO K01586   diaminopimelate decarboxylase [EC:4.1.1.20] Organism sit  Ruegeria sp. TM1040 Pathway sit00300   Lysine biosynthesis sit00470   D-Amino acid metabolism sit01100   Metabolic pathways sit01110   Biosynthesis of secondary metabolites sit01120   Microbial metabolism in diverse environments sit01230   Biosynthesis of amino acids Module sit_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine Brite KEGG Orthology (KO) [BR:sit00001]  09100 Metabolism   09105 Amino acid metabolism    00300 Lysine biosynthesis     TM1040_3495   09106 Metabolism of other amino acids    00470 D-Amino acid metabolism     TM1040_3495 Enzymes [BR:sit01000]  4. Lyases   4.1  Carbon-carbon lyases    4.1.1  Carboxy-lyases     4.1.1.20  diaminopimelate decarboxylase      TM1040_3495 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Orn_Arg_deC_N Orn_DAP_Arg_deC Ala_racemase_N Motif Other DBs NCBI-ProteinID:  ABF62467 RoseoBase:  TM1040_3495 LinkDB All DBs Position mega:531293..532558 Genome browser AA seq 421 aa AA seqDB search MDHFLYRDGALYAEDVPVAEIAATVGTPFYVYSTATLLRHFRLFDEALEGTDHLVCYAMK AASNQAILKTLAAAGAGMDVVSEGEYRRAKAAGVPGDKIVFSGVGKTAEEIRTALTGGIR QFNVESEPEMDVINAVALELGVTAPITVRVNPDVDAKTHAKIATGKSENKFGIPIAKARA VYAHAASLPGLEVIGIDVHIGSQLTDLEPFRLAYQKVAELTQALRADGHDIRRLDLGGGL GIPYTRSNEAPPLPVEYGQMIKEELGHLGCEIEIEPGRLVAGNAGLMVSKVIYIKEGEGR DFLILDGAMNDLIRPAMYEAHHDIIPVVEPTPGLEPQPYDIVGPVCESGDTFAKQRLMPP LAAGDLVAFRSAGAYGAVMSSEYNSRPLIPEVLVHGDQFAVIRQRPTFDEMINRDTIPEW L NT seq 1266 nt NT seq  +upstreamnt  +downstreamnt atggatcattttctctatcgcgatggcgctttgtacgccgaagatgtccccgtagccgag attgccgctacggtgggcacgccgttctacgtctactccaccgcgacgctcctgcgccat ttccgtctctttgacgaggcgcttgagggcaccgaccatctggtttgttacgcgatgaag gccgcctccaatcaggcgatcctaaagacactcgcggcggcgggcgcaggcatggatgtg gtgagcgaaggcgaataccgccgcgccaaggccgcaggcgtgccgggcgacaagatcgtg ttttccggtgtcggcaagaccgccgaagagatccgcaccgcgctcaccgggggcattcgc cagttcaacgtcgaatccgagcccgagatggacgtgatcaatgccgttgcgctcgagctt ggtgtcaccgcgccgatcaccgtgcgggtgaacccggatgtggatgcaaagacccacgcc aagatcgcgaccggtaaatccgagaacaaattcggcatccccatcgccaaggcgcgcgcg gtctatgcccatgccgccagcctgccgggccttgaggtgatcgggatcgatgttcacatc ggctcgcaactcacggatcttgagcccttccgccttgcctatcaaaaggttgcggagctg acacaggctctgcgcgcggacggtcacgatattcgccgccttgatcttgggggcggtctg ggcatcccctatacccgctccaatgaggccccgccgctgccggtggaatatggccagatg atcaaggaagagctcggtcatctgggctgcgaaatcgagatcgaaccgggccgtctggtg gcgggcaatgcggggctgatggtctctaaggtgatctacatcaaagagggcgaaggccgc gatttcctgatcctcgacggggccatgaacgacctcatccgcccagcgatgtatgaggcc catcacgacatcatccccgtggtggaaccgacccccggtctcgaaccgcaaccctatgac atcgtgggcccggtctgcgaaagcggcgacacctttgccaaacaacgcctgatgccgccg cttgctgcgggggatctggtggcgtttcgcagtgccggggcttatggcgcggtgatgtcc agcgaatacaactcgcgccccctcatccccgaggtgctggtccacggcgatcaatttgca gtcatccggcagcgtccgacctttgacgagatgataaatcgcgataccatcccagagtgg ctgtaa

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