KEGG   Ruegeria sp. TM1040: TM1040_3495
Entry
TM1040_3495       CDS       T00359                                 
Name
(GenBank) diaminopimelate decarboxylase
  KO
K01586  diaminopimelate decarboxylase [EC:4.1.1.20]
Organism
sit  Ruegeria sp. TM1040
Pathway
sit00300  Lysine biosynthesis
sit00470  D-Amino acid metabolism
sit01100  Metabolic pathways
sit01110  Biosynthesis of secondary metabolites
sit01120  Microbial metabolism in diverse environments
sit01230  Biosynthesis of amino acids
Module
sit_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:sit00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00300 Lysine biosynthesis
    TM1040_3495
  09106 Metabolism of other amino acids
   00470 D-Amino acid metabolism
    TM1040_3495
Enzymes [BR:sit01000]
 4. Lyases
  4.1  Carbon-carbon lyases
   4.1.1  Carboxy-lyases
    4.1.1.20  diaminopimelate decarboxylase
     TM1040_3495
SSDB
Motif
Pfam: Orn_Arg_deC_N Orn_DAP_Arg_deC Ala_racemase_N
Other DBs
NCBI-ProteinID: ABF62467
RoseoBase: TM1040_3495
LinkDB
Position
mega:531293..532558
AA seq 421 aa
MDHFLYRDGALYAEDVPVAEIAATVGTPFYVYSTATLLRHFRLFDEALEGTDHLVCYAMK
AASNQAILKTLAAAGAGMDVVSEGEYRRAKAAGVPGDKIVFSGVGKTAEEIRTALTGGIR
QFNVESEPEMDVINAVALELGVTAPITVRVNPDVDAKTHAKIATGKSENKFGIPIAKARA
VYAHAASLPGLEVIGIDVHIGSQLTDLEPFRLAYQKVAELTQALRADGHDIRRLDLGGGL
GIPYTRSNEAPPLPVEYGQMIKEELGHLGCEIEIEPGRLVAGNAGLMVSKVIYIKEGEGR
DFLILDGAMNDLIRPAMYEAHHDIIPVVEPTPGLEPQPYDIVGPVCESGDTFAKQRLMPP
LAAGDLVAFRSAGAYGAVMSSEYNSRPLIPEVLVHGDQFAVIRQRPTFDEMINRDTIPEW
L
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggatcattttctctatcgcgatggcgctttgtacgccgaagatgtccccgtagccgag
attgccgctacggtgggcacgccgttctacgtctactccaccgcgacgctcctgcgccat
ttccgtctctttgacgaggcgcttgagggcaccgaccatctggtttgttacgcgatgaag
gccgcctccaatcaggcgatcctaaagacactcgcggcggcgggcgcaggcatggatgtg
gtgagcgaaggcgaataccgccgcgccaaggccgcaggcgtgccgggcgacaagatcgtg
ttttccggtgtcggcaagaccgccgaagagatccgcaccgcgctcaccgggggcattcgc
cagttcaacgtcgaatccgagcccgagatggacgtgatcaatgccgttgcgctcgagctt
ggtgtcaccgcgccgatcaccgtgcgggtgaacccggatgtggatgcaaagacccacgcc
aagatcgcgaccggtaaatccgagaacaaattcggcatccccatcgccaaggcgcgcgcg
gtctatgcccatgccgccagcctgccgggccttgaggtgatcgggatcgatgttcacatc
ggctcgcaactcacggatcttgagcccttccgccttgcctatcaaaaggttgcggagctg
acacaggctctgcgcgcggacggtcacgatattcgccgccttgatcttgggggcggtctg
ggcatcccctatacccgctccaatgaggccccgccgctgccggtggaatatggccagatg
atcaaggaagagctcggtcatctgggctgcgaaatcgagatcgaaccgggccgtctggtg
gcgggcaatgcggggctgatggtctctaaggtgatctacatcaaagagggcgaaggccgc
gatttcctgatcctcgacggggccatgaacgacctcatccgcccagcgatgtatgaggcc
catcacgacatcatccccgtggtggaaccgacccccggtctcgaaccgcaaccctatgac
atcgtgggcccggtctgcgaaagcggcgacacctttgccaaacaacgcctgatgccgccg
cttgctgcgggggatctggtggcgtttcgcagtgccggggcttatggcgcggtgatgtcc
agcgaatacaactcgcgccccctcatccccgaggtgctggtccacggcgatcaatttgca
gtcatccggcagcgtccgacctttgacgagatgataaatcgcgataccatcccagagtgg
ctgtaa

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