Ruegeria sp. TM1040: TM1040_3527
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Entry
TM1040_3527 CDS
T00359
Name
(GenBank) succinate dehydrogenase subunit A
KO
K00239
succinate dehydrogenase flavoprotein subunit [EC:
1.3.5.1
]
Organism
sit
Ruegeria sp. TM1040
Pathway
sit00020
Citrate cycle (TCA cycle)
sit00190
Oxidative phosphorylation
sit00650
Butanoate metabolism
sit00720
Other carbon fixation pathways
sit01100
Metabolic pathways
sit01110
Biosynthesis of secondary metabolites
sit01120
Microbial metabolism in diverse environments
sit01200
Carbon metabolism
Module
sit_M00009
Citrate cycle (TCA cycle, Krebs cycle)
sit_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
sit_M00149
Succinate dehydrogenase, prokaryotes
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
TM1040_3527
00650 Butanoate metabolism
TM1040_3527
09102 Energy metabolism
00190 Oxidative phosphorylation
TM1040_3527
00720 Other carbon fixation pathways
TM1040_3527
Enzymes [BR:
sit01000
]
1. Oxidoreductases
1.3 Acting on the CH-CH group of donors
1.3.5 With a quinone or related compound as acceptor
1.3.5.1 succinate dehydrogenase
TM1040_3527
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_2
Succ_DH_flav_C
GIDA
DAO
Pyr_redox_2
Thi4
FAD_oxidored
FAD_binding_3
HI0933_like
DeoRC
Olfactory_mark
Motif
Other DBs
NCBI-ProteinID:
ABF62499
RoseoBase:
TM1040_3527
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Position
mega:560816..562624
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AA seq
602 aa
AA seq
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MTAAYEYETHEYDVVVVGAGGAGLRATLGMAEQGLRTACVTKVFPTRSHTVAAQGGIAAS
LGNMGPDSWQWHMYDTVKGSDWLGDTDAMEYLAREAPKAVYELEHYGVPFSRTEEGKIYQ
RPFGGHTTEFGEGPPVQRTCAAADRTGHAILHTLYGQSLKNNAEFYIEYFAIDLIMSEDG
QCQGVVCWKLDDGTMHVFNAKMVVLATGGYGRAYFSATSAHTCTGDGGGMVARAGLPLQD
MEFVQFHPTGIYGSGCLITEGARGEGGYLTNSEGERFMERYAPNYKDLAPRDYVSRSMTM
EIREGRGVGEHGDHIHLNLSHLPAEALAERLPGISESAKIFAGVDVTKEPIPVLPTVHYN
MGGIPTNYWGEVLNPTEDNPTGVVPGLMAVGEAGCASVHGANRLGSNSLIDLVVFGRASA
IRAGKVVDPEAPNPVLNQASIDKAFDRFDGLRNAKGGTPTAELRLEMQRTMQADAAVFRT
DKTLKEGVEKMEVIAAKLDDLHVTDTSLVWNSDLMETLELTNLMPNALATIVGAEARKES
RGAHAHEDYAERDDENWRVHTVARVEGNKTSLSYRPVIVDPLTNEDAGGISLKKIAPKAR
TF
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgacagcagcatatgaatatgaaacccatgaatatgacgtggtggttgtgggcgccggc
ggcgccggtctgcgggcgacgcttggcatggccgagcagggtctgcgcacagcctgcgta
accaaggtcttcccgacccgctcgcacaccgtggccgcacaggggggcatcgccgcctcg
cttggcaacatggggcccgacagctggcagtggcacatgtatgacaccgtcaaaggctcg
gattggctgggtgacacggatgcgatggaatatctcgcccgtgaggcgcccaaagcggtc
tacgaacttgagcactacggcgtgccgttctcgcggacggaagaaggcaagatctatcag
cgtcccttcgggggtcacaccaccgagtttggtgaaggcccgccggtgcagcgcacctgt
gccgccgccgaccggaccggccacgcgatcctgcacacgctctatgggcagagcctcaag
aacaacgcggaattctatatcgagtatttcgccatcgacctgatcatgtccgaggacggg
caatgtcagggtgtggtgtgctggaagctcgatgatggcaccatgcatgtcttcaacgcc
aagatggtggtgctggcgaccggcggttatggccgtgcctatttctctgcgacctcggcc
catacctgcaccggcgacggtggcggtatggtagcgcgcgcgggtctgccgcttcaggat
atggagtttgtgcagttccacccgaccggcatctacggctccggctgtctgatcaccgag
ggcgcgcgcggcgaaggcggctacctgacgaactccgagggtgagcgctttatggagcgg
tatgcgcccaactataaagacctcgcaccgcgcgactatgtctcgcgctccatgaccatg
gagatccgcgaaggtcgtggtgtgggtgagcatggcgaccatatccacctgaacctcagc
cacttgccggccgaagcgctggcggagcgtctgccggggatttccgagtctgcaaaaatc
tttgcaggtgtcgacgtcaccaaagagccgatcccggttctgccgaccgtgcactacaac
atgggcggtatccccacgaactattggggtgaggtgctgaaccccactgaggacaacccg
accggtgttgttccgggtcttatggccgtgggtgaggcgggctgtgcctctgtgcatggt
gccaaccgtctgggctccaactctctcatcgaccttgtggtctttggccgtgcatcggcg
atccgcgccggcaaggtcgtggacccagaggcccccaacccggtgctgaaccaggcgtcc
atcgacaaggcctttgatcgctttgacgggctgcgcaacgccaagggtggcacgccgacc
gcggaactgcgccttgagatgcagcgcaccatgcaggcggatgcggcggtgttccgcacc
gacaagaccctcaaggaaggcgtcgagaagatggaggtgatcgcggccaagctcgacgat
ctccatgtcaccgatacctcgttggtgtggaactccgacttgatggagacgctcgagctt
accaacctgatgcccaacgcgctggcgaccatcgttggcgctgaggcgcgcaaggaaagc
cgtggtgcccatgcgcatgaggattacgccgagcgtgacgatgaaaactggcgtgtgcac
accgtggcacgggttgagggcaacaagacctccctcagctatcgtccggtgattgttgat
ccgctgaccaatgaggacgccggtggcatcagcctcaagaagatcgcgcccaaggctcgg
accttctaa
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