Ruegeria sp. TM1040: TM1040_3669
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Entry
TM1040_3669 CDS
T00359
Name
(GenBank) DNA polymerase III epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
sit
Ruegeria sp. TM1040
Pathway
sit03030
DNA replication
sit03430
Mismatch repair
sit03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TM1040_3669
03430 Mismatch repair
TM1040_3669
03440 Homologous recombination
TM1040_3669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sit03032
]
TM1040_3669
03400 DNA repair and recombination proteins [BR:
sit03400
]
TM1040_3669
Enzymes [BR:
sit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TM1040_3669
DNA replication proteins [BR:
sit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TM1040_3669
DNA repair and recombination proteins [BR:
sit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TM1040_3669
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DEDDh_C
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
ABF62636
RoseoBase:
TM1040_3669
LinkDB
All DBs
Position
mega:721903..723342
Genome browser
AA seq
479 aa
AA seq
DB search
MLRSLSLRLRIFLFFCLLAVGAIALAAVALGFVWTRSDSEWTASELTTVILLFGFLNTGL
VLGIWLLFDENVARPIEGLSTSLRLRAHSGIEDSIKAQAAQYLGDLAPAARALSDALAAS
GDQPPEQTQRLLQERERLTALLSEIPIATILVNAAGEIALYDAQAGAILSRIAAPRLGAP
LSNYFDLTPAIGACARADRRLVAGHVTVPDCNHAETFNLQIKSLGAEGDVIFLEADTRAE
RDTLSPPLVFDFDLLDQKLEGTITARRLSELNFVVFDTETTGLSVTKDAIVELAAARVLN
GRILDGEVFETYVDPGRPIPAASTKIHGVRDADVAQSPRIEAVIPAFHDFAQSAVLVAHN
APFDIGLLRQQEVQTGCSWDHPVVDTVLLSALVFGISADHSLDALCSRLSIEIPARHRHT
AKGDARATAEALIRLLPLLQGKGIETFGQLLKETSKFGRLLRDINSDHVRNAPEMSDSP
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgcttagatccctgtcccttcgcctgcgcatcttcctgttcttctgcctcctggctgtg
ggagcaatcgcgctggctgcggtggcgttgggttttgtctggacccgctctgattcagag
tggacggcttcagaactcaccacggtgatcctgttgttcgggtttttgaatacaggtctg
gtgctggggatctggctgctgtttgacgaaaacgtcgcgcgcccgatcgaggggctttcg
accagtctgcgcctgcgtgcccactccggaattgaggacagcatcaaagcacaggcagcg
caatacctcggcgatctggccccggcggcacgcgcgctgtcggatgcgcttgcggcttct
ggagatcagccaccagaacagacccagcgcctgcttcaggaacgggagcggctgactgcg
ttgctcagcgaaattcccattgcgacgatccttgtaaacgcagcaggtgagattgcactc
tatgacgcgcaggccggggccatcctctcccgcatcgccgcaccgcgccttggggcgcca
ctctcgaactatttcgatctgacgcccgcaatcggcgcctgtgcccgagcagaccggcgc
ctcgtagcggggcatgtgaccgtcccagactgcaatcatgccgaaacgttcaatctgcag
ataaaatcgctcggtgcggagggcgatgtgatcttccttgaagccgatacgcgggcggag
cgcgacacgctgtcccctcctttggtctttgattttgaccttctggatcagaaacttgag
gggacgataacggccagacgcctctcggagctgaacttcgtggtctttgacaccgagacg
accgggttgtcggttaccaaggatgccatcgtggaactcgccgctgcccgtgtgctgaac
gggcgcatcctcgacggcgaggtctttgaaacctatgtcgatccaggccgaccgatcccc
gcagcgtccaccaagatacatggcgtacgcgatgcggatgtggcgcagtcaccccggatc
gaagcggtgatcccggcgtttcatgactttgcacagagcgccgttctggttgcccataac
gccccctttgacatcgggctattgcgtcaacaagaggttcagaccgggtgcagttgggac
catccggttgtcgatacagtgctgttgtcggccttagtgtttgggatttcagcggatcat
tcgctggatgctttgtgcagccgtctttcgatcgaaatccccgcccggcaccgccatacg
gccaagggagatgcgcgcgctacggcagaagcgctcatacgccttctgccgctcttgcag
ggcaaggggatcgagacctttggtcaactcctaaaggaaacctccaaatttggccgactg
ctgcgggacatcaactctgaccacgtccgaaacgcgcccgagatgagcgacagcccctag
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