Setaria italica (foxtail millet): 101753075
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Entry
101753075 CDS
T02818
Name
(RefSeq) DNA repair helicase XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03022
Basal transcription factors
sita03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
101753075
09124 Replication and repair
03420 Nucleotide excision repair
101753075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sita03021
]
101753075
03036 Chromosome and associated proteins [BR:
sita03036
]
101753075
03400 DNA repair and recombination proteins [BR:
sita03400
]
101753075
Enzymes [BR:
sita01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101753075
Transcription machinery [BR:
sita03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
101753075
Chromosome and associated proteins [BR:
sita03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
101753075
DNA repair and recombination proteins [BR:
sita03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
101753075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
NAMPT_N
Motif
Other DBs
NCBI-GeneID:
101753075
NCBI-ProteinID:
XP_004960471
UniProt:
K3Z428
LinkDB
All DBs
Position
III:complement(3776284..3781544)
Genome browser
AA seq
758 aa
AA seq
DB search
MRFDLDGMPVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTAALISLITSYS
LANPSRPLRLIYCTRTVHEMEKTLAELRLLFAHLPPAASRSLLALGLSSRKNLCVHPQAS
AAAARDSVDTACRRLTASWVREKAASDPESTPLCEFYETFDRAAAAGDLASLMPPGVYTL
ADLRALGRQRRVCPYFLARQMVKYANVVVYSYQYLLDPKVASIVSREMQKECVVVFDEAH
NIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLAQRGN
LPISDAWLANPALPDDILREAVPGNIRRAEHFLAVLRRLVRFLDGRLETENVENEMPIAF
VASIHSSAGIDQKMLRFCYDRLHSLMMTLEITDTDEFMHIQTICDFATLIGTYTRGFSII
IEPYDERMPDIRDPVIQLSCHDASLAIRPVFDRFETVVITSGTLSPIDLYPRLLNFNPVI
SRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVC
FFVSYSYMDGIVNSWHEMGILQDIMQYKLVFIETPDVVETTLALDNYRKACDCGRGAVFF
SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDAL
RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIA
REFLRRMAQPYDKTGSGGKKTLLTEEDLQNMAQDEMEM
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgcggttcgacctggatggcatgccggttcacttcccgtacgcggcgatctacccagag
cagcacgcgtacatgggggagctcaagcgcgccctcgacgcgcgcgggcacgcgctgctc
gagatgcccacgggcaccggcaagacggcggcgctgatctccctcatcacctcctactcc
ctcgccaacccgtcccgcccgctccgcctcatctactgcacgcgcaccgtgcacgagatg
gagaagaccctcgccgagctccgcctcctcttcgcccacctgccccccgccgcctcccgc
tccctcctcgcgctcggcctctcctcccgcaagaacctctgcgtccacccgcaggcgtcc
gccgccgcggcccgggactccgtcgacaccgcgtgccgccgcctcacggcctcctgggtc
cgcgagaaggccgcctccgacccggagtccacgccgctgtgcgagttctacgagacgttc
gaccgcgccgccgccgccggggacctcgcatccctcatgccgcccggggtgtacaccctc
gctgacctccgcgcgctcgggaggcagcggcgggtctgcccctacttcctcgccaggcag
atggtcaagtacgccaatgttgtggtgtacagctaccagtacctgctcgaccccaaggtg
gccagcattgtgtcaagggagatgcagaaggagtgtgtggtcgtgttcgatgaggctcac
aacatcgacaatgtctgcatcgaggcgctgagcgtcagcattcgcaagcagacgctggaa
ggtgctgagcggaatctacggcgtatctcgcaagagattgacaggttcaaggccaccgat
gccaataggcttcgtgctgagtacaacagacttgtggatgggctagcacagaggggaaat
ctaccaatatcggatgcttggcttgcaaatccggctttgcctgatgacattctgagggaa
gctgttcctggaaacataaggagagctgagcattttcttgctgtcttgcggcggcttgtg
agattccttgatggacggctggaaacagaaaatgttgagaatgaaatgcccattgccttt
gttgcttcgatccattcctcggctggaatcgaccagaaaatgctgaggttttgttatgac
cggctacactcactaatgatgacattagagataaccgatacagatgagttcatgcacatt
cagaccatctgtgactttgccacattgattggaacttacacacgaggcttttccataata
atagaaccatatgatgaaagaatgcctgacattcgtgatcctgtgattcagctgagttgc
catgatgcttcactcgcaataagacctgtttttgatcgttttgaaacagttgtgatcact
tctggaactctcagcccaattgatctttatcctcgtctcttgaattttaatcctgttata
agcagaagtttcacaatgtctttgacaagggattgtatttgtcccatggtcttgactcga
ggaagtgatcagctacctgtgagtacaaagtttgatatgcgtagcgatcctggtgtggtg
aggaattatggccgcctcttgctggaaatggcttctgctgttccagatggcatagtttgc
ttttttgtcagttattcttatatggatggcattgtcaacagctggcacgaaatgggaatt
ctgcaggacatcatgcaatataaattagtattcatcgaaaccccagatgtcgtcgagaca
actttggctcttgataactacagaaaggcgtgcgactgtggaagaggtgctgttttcttc
tctgttgccaggggcaaagttgctgaaggtattgattttgaccgacactatggcagactt
gttatcatgtttggtgttcctttccagtacacactcagcaggatattgcttgctaggttg
gagtacctaagagaaacttttcagataaaggagggtgacttcctgacatttgatgctttg
aggcaagcagcccaatgtgttggccgcgtgattcgctctaaagctgactatggaatgatg
atatttgctgacaagaggtacagtcggcatgataaacggtctaagttgcctgggtggata
ctgtcacacttgcatgatgctcacctaaacctgagcactgatatggctctgcatatagct
cgagagttcctccggaggatggcgcagccatacgacaagacagggagcggcggcaagaag
acgctcctgactgaggaggacctgcagaatatggcgcaggacgaaatggagatgtga
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integrated database retrieval system
