Setaria italica (foxtail millet): 101753358
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Entry
101753358 CDS
T02818
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03013
Nucleocytoplasmic transport
sita03015
mRNA surveillance pathway
sita03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101753358
09122 Translation
03013 Nucleocytoplasmic transport
101753358
03015 mRNA surveillance pathway
101753358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101753358
03041 Spliceosome [BR:
sita03041
]
101753358
Enzymes [BR:
sita01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101753358
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101753358
Spliceosome [BR:
sita03041
]
Complex C
Other components
EJC/TREX
101753358
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101753358
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
101753358
NCBI-ProteinID:
XP_012700218
UniProt:
K3ZG75
LinkDB
All DBs
Position
III:complement(8119497..8124157)
Genome browser
AA seq
429 aa
AA seq
DB search
MMGEAKENDVYEEELLDYEEDDDKTVDGSAAKPTGEVAKKGYVGIHSSGFRDFLLKPELL
RAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVAAL
VLCHTRELAYQICHEFERFSKYLSEVKVAVFYGGVHIRKHKDLLKNECPHIVVGTPGRIL
ALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRP
VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEAEKNRKLNDLLDALDFNQVVIFVKSV
SRAAELNKLLCECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVN
IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQ
IDTSTYMPS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgatgggagaggccaaggagaacgacgtctacgaggaggagctcctggactacgaggag
gacgacgacaagacggtcgatggctccgccgccaagcccaccggagaggtcgcgaagaag
ggctacgtcggcatccacagttccgggttcagagacttccttctcaagccagagctgctt
cgtgctatccaggactgtggttttgagcatccatccgaagtgcaacacgagtgcatccct
caagcaattcttggaatggatgtcatatgtcaagcaaaatctgggatgggcaagactgca
gtttttgtcctttcatccctccaacaaattgaccctgttgcgggtcaggtagcagcactt
gtactgtgccacacaagggaactggcttaccagatatgccacgagtttgagaggttcagc
aaatatctgtctgaagttaaagttgctgtcttctacggaggagttcacatcaggaagcat
aaagatttgctgaagaatgaatgccctcatattgtggtcggcactccaggaaggatactt
gctcttgccagagagaaggatctctccctcaagaatgtgcggcatttcatccttgatgaa
tgtgacaagatgctcgagtcacttgatatgcggagagatgtccaggagatcttcaaaatg
actcctcatgacaagcaagtcatgatgttttcagcaacactcagcaaggagatccgtcct
gtatgcaagaaatttatgcaagatccgatggaaatttatgttgatgatgaggcaaaattg
accctccatggtcttgtacagcactacataaaacttaccgaggcagagaagaataggaaa
ctgaacgatctcttggatgctcttgatttcaaccaagttgtgatattcgtgaagagtgtt
agcagggctgcagagctgaataagttgctttgtgagtgcaacttcccttcaatctgcatc
cattctgggatgacccaggaagaaaggttaacccggtacaagaacttcaaggaaggccac
aagagaattcttgtggctacagatttagttggcaggggcattgatattgagcgggtcaac
attgtcataaactatgacatgccagactcagcagatacatatttgcacagggttggtagg
gctggacgttttggcacaaagggacttgcaattacctttgtttcctctgcctcagattct
gatgttcttaaccaagtgcaagaaaggttcgaggtggacataaaggaactgcctgagcaa
attgacacttccacatacatgccatcataa
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