Setaria italica (foxtail millet): 101754471
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Entry
101754471 CDS
T02818
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101754471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sita03041
]
101754471
Spliceosome [BR:
sita03041
]
Complex C
Other components
Step II factors
101754471
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_IFT122_1st
WD40_CDC20-Fz
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_WDR75_1st
DSE1_N
Beta-prop_RIG_2nd
ASA1
WDR90_beta-prop_4th
PAC11
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_WDR41
Beta-prop_Aladin
Beta-prop_EIPR1
Beta-prop_VPS8
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_NOL10_N
CFAP251_N
Beta-prop_IFT140_1st
TRM82_WD
eIF2A
Beta-prop_Vps41
Beta-prop_ACSF4
Beta-prop_NWD2_C
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
101754471
NCBI-ProteinID:
XP_004984098
UniProt:
K4A7Q3
LinkDB
All DBs
Position
IX:complement(43422061..43425296)
Genome browser
AA seq
572 aa
AA seq
DB search
MDLLQSSYSPDDASSPEESAAASSPDSSPLRLPSKSAAPAVDDTALALSAAASASRPLDP
SLHLVAFNPTADQLWAPIVGPQHPHAPISSASGNRNHKLGHVEDAAVLPFLFDEQYNTFH
RFGYASDPSGLHIVGDAQSQAPEPDTVYNLAPSEHKRRRLLAKADNQEEPLPPDARNPAS
EEWILHNKQSPWAGKKEAPPAELTEEQKQYAEAHAAKKAEKEARGEGKGERAEVVVKSTF
HGKEERDYQGRSWITPPKDAKASNDHCYIPKRCVHEWVGHTKGVSAIRFFPKYGHLLLSA
SMDCKIKIWDVLGSRTCMRTYMGHSKAVRDISFSNDGTKFLSAGYDRNIQYWDTETGQVI
STFSTGKVPYVVKLNPDEDKQHILLAGMSDKKIVQWDMKSGQITQEYDQHLGAVNTITFV
DNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIALHPNSNWLAAQSLDNQILI
YSTKERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGSCWFWDWKSCRRFKTLK
CHNGVCIGCEWHPLETSKVATCGWDGVIKYWD
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggatctcctccagtcctcgtactcgccggacgacgcctcctcgccagaggagtcggcg
gccgcttcctcgccggactcctccccgctccgcctcccctccaagtccgccgcccccgcc
gtcgacgacaccgcgctcgcgctctccgccgccgcctcggcctcccgcccgctcgacccc
tctctccacctcgtcgccttcaaccccaccgccgaccagctctgggcgccaatcgttgga
cctcagcacccccacgcccccatctcctccgcctccggcaaccgcaaccacaagctgggc
cacgtcgaggacgccgcggtactgcctttcctcttcgacgagcagtacaacaccttccac
aggttcggctacgcatccgacccctccggcctccacatcgtcggcgacgcgcagtcgcag
gcgcccgagcccgacaccgtctacaacctcgccccctccgagcacaagcgccgccgcctc
ctggccaaggcggacaaccaggaggagccactgcccccggatgccagaaatccggcctcc
gaggagtggatcctccacaacaagcagagcccctgggctggcaagaaggaagcgccgccc
gcggagcttactgaagagcagaagcagtatgccgaggcgcacgcggccaagaaggcagag
aaggaggctcgcggtgaagggaagggtgagagggcagaggtggtggtcaagagcaccttc
cacgggaaggaggagagagactaccaggggaggtcctggatcacaccacccaaggatgcc
aaggccagcaacgaccactgctacatccctaagaggtgtgtgcatgagtgggtcggccac
accaaaggggtttcagccatcagatttttccccaagtatgggcatctcttactgtctgcg
agtatggattgtaagattaagatctgggatgtgctcgggtcgcggacatgtatgcgcaca
tatatgggtcactcaaaggcagtgagggatatttcgttctccaatgatgggaccaaattc
ttgagtgctgggtatgacaggaacatacagtactgggatactgagacagggcaggtgatc
tcgaccttctcaaccgggaaggtcccatatgttgtgaagctgaatcctgatgaggataag
cagcatattcttcttgccggaatgagcgacaagaagattgtgcaatgggatatgaaatca
gggcagataacacaagagtacgatcagcatttaggggctgtgaacaccataacatttgtc
gataataacaggaggtttgtgacatcgagtgatgacaagtctcttcgtgtttgggagttt
ggcatccctgtggtgattaagtatatcagtgagccacacatgcactcaatgccatcgatt
gcgctgcacccaaactctaactggctggcagcacagagcttggacaatcaaatactgata
tacagcaccaaggagaggttccaactcaataagaagaagcgatttgctggccacattgta
gcaggttatgcttgtcaggtgaacttctcacctgatgggagatttgtgatgtcaggtgac
ggtgaaggtagctgctggttctgggattggaaaagctgcaggaggtttaagacattgaag
tgccacaatggggtctgcattggatgtgagtggcatccgttggaaactagcaaggttgca
acatgtggatgggatggtgtaattaaatactgggattga
DBGET
integrated database retrieval system