Setaria italica (foxtail millet): 101754568
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Entry
101754568 CDS
T02818
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 4
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101754568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101754568
Enzymes [BR:
sita01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101754568
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101754568
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101754568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
101754568
NCBI-ProteinID:
XP_004962198
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All DBs
Position
III:22310852..22315537
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AA seq
447 aa
AA seq
DB search
MTYDVYTKPLRGTDRWDHLSDQIQHIVVGGGAVSSAAAETTGNLPNRAPPMLKPQTSWTA
SLPLFLLRRCSRSAPNPFPPGGRRLPCLPVCKRRMSTQAQPRFAPLPTEQSESQADAGAA
GYQFRLVSYNILAQVYVKSAFFPHSPSACLKWKSRSKAVLTELKSFDADLMCIQELDEYD
TFYKKNMEASGYSSIYIQRSGDKRDGCGIFYKPKSAELVQKEAIHYNDLVEKYVHSDHVN
SALPNNSSPEEDTNAKQDNSKRGDPNDPRVRLKRDCVGLLAAFKLSDPYDHILIVANTHI
YWDPEWIDVKLAQAKYLLSRVSQFEQLISNKFNSKPSVIIAGDFNSTPGDKVYNYLVSAN
LESTDEAPIKLRSLYAVNGGEPEFTNYTPGFTGTLDYIFLSDGSSIKPTSLLCLPRGDST
DVQGGLPNFQHPSDHLPIGADFLVVNS
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgacgtatgacgtgtacacaaaacctttgcgaggtactgacaggtgggaccacttatca
gatcagattcaacacatcgtcgtcggaggcggagccgtctcatcggcggcggcggaaaca
accgggaacctaccgaacagggcaccaccgatgctaaaaccccagacgtcgtggacagct
tccctccctctcttcctcctccgccgctgctcgagatccgcacccaacccctttcctccc
ggcggccgccggcttccctgtctcccggtttgcaagcggcggatgagcacgcaggcgcag
cccaggttcgctcccctccccacggagcaatctgaatcccaagccgatgccggggctgca
gggtatcagttccggctggtctcctacaacatcttggcccaggtttatgttaagagtgcg
tttttcccgcattcgccatcagcgtgcctcaagtggaaatctcgatccaaagctgttcta
acagagctcaagagtttcgatgctgacctcatgtgcatacaggagttggatgagtatgat
accttctacaagaaaaatatggaagcttctggatattcaagtatttacattcagcgatct
ggagacaaacgggatggttgtggtatattctataaaccaaaaagtgcggaactggtgcag
aaagaagcaatacattacaatgacttagtggaaaaatacgttcatagtgatcatgtaaat
agtgccctgccaaataattcttcaccagaagaagacacgaatgcaaagcaagataatagc
aagcgtggagatccaaatgatccacgcgtaagattgaagcgtgactgtgttggtttactc
gcagctttcaagcttagtgatccttatgatcacattttaatcgtggcaaatacacatatt
tattgggacccagaatggattgatgtgaagttggctcaggcaaaatatcttctttcgaga
gtctctcaatttgagcaactcatctcaaataaatttaattctaagccctcagtgatcatt
gctggtgatttcaattcgaccccaggtgacaaggtatacaattaccttgtatcagccaac
ttagaatctacagatgaagctccgatcaagttacgcagcctttatgctgtgaatggaggg
gagccagagttcacaaactacactcctggttttactggaacattggactacatattcttg
tcggatggtagttcaataaaacctactagcctactttgtttgccgcgaggggattctacg
gatgtgcaaggaggcctgcccaactttcagcatcctagtgaccatttaccaattggtgct
gattttcttgtagttaacagctag
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