Setaria italica (foxtail millet): 101755130
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Entry
101755130 CDS
T02818
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101755130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101755130
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
101755130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_16
TPR_1
TPR_14
TPR_11
TPR_8
TPR_17
TPR_CcmH_CycH
TPR_19
TPR_7
TPR_6
TPR_12
TPR_9
ARM_TT21_C
TPR_15
BTAD
Motif
Other DBs
NCBI-GeneID:
101755130
NCBI-ProteinID:
XP_004983755
LinkDB
All DBs
Position
IX:39275571..39282916
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AA seq
1194 aa
AA seq
DB search
MPETVAEANLRRQLEQTLAADPSSPLHHYNLGVFLWGRAEAEQEGDGDEARRLRAAAAEH
FLAAAKLNPNDGVPFRFLGHHYARGGDTQRAAKCYQRAVALNPDDAEAGEALCDLLDVEG
KESLELAVCNEAAGKSPRAFWAFGRLGYLQVHQRKWSDAIQSLQHAIRGYPTCADLWEAL
GLAYHRLGMFTAAVKSYGRAIELDSSRVFVLIESGNIQLMLGYFRKGVEQFRSALEMAPH
NHSAYFGLASALLAWARNCVTTGAFGWAASLLKEASEAAKNCASLTGNLSCVWKLHGDVQ
LALARCFPWEDGKIKRGVDVQMFKDSVQEWRNACLSAANGAKLSYQRALHLTPWEANVHN
DTAVCLDLIYSMDGNNRHNPNFWELSEKMSLGALILEPVNKDFWVTLGSMSHDLALKQHS
FIRALHLDMSLSEAWAYLGKIYRQAGDKQLAKEAFDRARSIDPSLALPWAGMSAENYHQS
GGGTVNESFESCLRAAQILPLPEFQIGLGTIAARTGNLLSPQVLMGVRQAVRRAPHYPES
HNINGLVSEVRSDFQSAIRFYHQARFALGMMYNSKSDNKYALADVSVNLARSLYKAGLAT
DAVRECEELRSQGLLSMDGLQIYALALWKTGRSEEALSVSRNLAENLSGMKPESATEALG
FICTLTYAISGKDTAAAVIHKLPGQLNYSSQLKFIISALDALHPNKRFQLPQLSMPPRLT
SYEVMSEVHSNIALGKAIGGELDKPLRVDASLSYLKKVLHMYPNCSLVRNQLGSLLLWSG
DWMASHKAVRVTSLTHGHTSSMGLRSAHQIQACAMVCCYATCTSYPKFSFPTCEHQYLSE
HDEIHHLQRLVHREPWNQDARYLLVLAIFQKAREEKYPKHICIILKRLILQVLSNISNSR
ENKVVQHEVFLLLLLSSEICLQYLDYENCIGQAKEALRMTASSCVDTFFAHLQLCRAYAV
QGDLLNSRNEYMNCLKNHTNIEMGWVILKHLESACSLEASSDEIDINLRECIKRNGSDPS
KWMSLFNLVCAQCFVWDENFASAEKALAQACAEGDPDSCILFFNGATCMEIARRFAAPQF
ISRASSSLRKAQQKSHASLPLVSLLLAQAEGSLGSKTKWEKNLRLEWFSWPPELRPAEVY
FQMHLLARQSAAAAFQQNQLVETMQNPESWLLRAIHLNPSCSRYWKALMQLMDA
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgccggaaactgtggcggaggccaacctccgcaggcaactggagcaaaccctcgccgcc
gacccctccagcccgctccaccactacaaccttggcgtcttcctatggggccgcgcggag
gcggagcaggagggcgatggggacgaggcgcggcggctccgcgcggcggcggcggagcat
tttctcgccgcagccaagctgaaccccaacgatggcgtccccttccgcttccttggccac
cactacgctcgtggcggcgacacgcagcgagcggccaagtgctaccagcgcgcagtggcg
ctcaaccctgacgatgccgaggctggggaggcgctctgtgacttgctagatgtagagggg
aaggagagcttggagcttgctgtgtgcaatgaggcagctggcaagtcacctcgcgcattc
tgggcctttgggaggcttggctacttgcaggttcatcagaggaaatggtcagatgccata
caaagccttcagcatgcaatacgaggttacccaacatgtgcagatttatgggaggcactt
ggtctggcataccaccgtttgggcatgttcactgcagcagtaaagtcatatggacgagct
attgaacttgatagttccagggtctttgtgttgatagaaagtggaaacatccagctaatg
cttggctatttcagaaagggagttgaacagtttcgttctgctttggaaatggctccacac
aatcattcggcatactttggacttgcttctgcattgcttgcatgggcaaggaattgtgta
actactggggcctttggctgggctgctagcctgttgaaggaagcatctgaagctgccaaa
aattgtgcttcattgactggaaacctttcatgtgtttggaaattgcatggagatgttcag
ctcgcacttgcaagatgctttccatgggaggatgggaagatcaaaaggggtgtggatgtg
cagatgttcaaagattctgttcaggagtggagaaatgcatgtttgtcagcggcaaatggt
gcaaaactctcatatcaacgggctttgcatcttacaccctgggaagctaatgttcacaat
gatactgctgtatgtcttgatctaatttattccatggatggcaataacagacacaaccca
aatttttgggagctgtcagagaaaatgtcacttggtgccttgatactggaaccagttaat
aaggatttctgggttacattgggttcaatgtcacatgatctggctttgaagcagcattct
tttatcagggcacttcatcttgatatgtctctgtctgaagcttgggcataccttggaaag
atttacaggcaagcaggtgataagcaattggcaaaggaagcatttgatcgagctcgaagc
attgatccttcattggccttgccgtgggctggaatgtcggcggaaaactatcaccaatct
gggggcggtacagtaaatgaatcttttgaaagctgcttgagggctgcgcagatcctacct
ctgccagagttccagatcggccttggaacaattgctgcccgtactggtaatcttctttca
cctcaggtgttgatgggtgtaaggcaggctgttcgtcgagcaccgcattacccagagtct
cacaatataaatggcttggtttctgaagtgcgatcagattttcagtctgcaatcagattt
taccatcaagcaagatttgctttaggcatgatgtacaattccaagtcagacaataaatat
gctcttgctgatgtttcagtgaaccttgcccggtcattatacaaggccggtcttgcaact
gatgcagtgcgggagtgtgaagagttgagatctcaaggactgctgagcatggatggatta
cagatatatgctcttgcactgtggaaaactggacgaagtgaggaagctctttctgtatct
agaaacttagctgaaaatttatcaggcatgaagccggagagtgcaactgaggctttggga
ttcatatgcacattgacatatgcaatttctgggaaggacactgcagctgctgtcattcac
aagcttcctggccaactcaattatagctcgcagttgaaatttattatttctgcattggat
gctttgcatccaaacaagcgtttccagttgcctcagttgagcatgcctcctaggcttaca
tcctatgaagtgatgagtgaagtccactcgaatattgctcttgggaaggcgattggaggg
gaattggacaagcctttgagggttgatgctagtttgtcttacctaaaaaaggtcctgcac
atgtatcccaactgcagtttagtgagaaaccaacttggatctctgctcctgtggagtgga
gattggatggcttctcataaagctgtaagggttacttctctgacacatggtcacacatcc
agtatgggcctaagatctgcacatcagattcaagcatgtgcaatggtttgttgctatgct
acctgcacctcttacccaaagttctccttcccaacatgtgaacaccagtacttaagtgaa
catgatgaaatacaccacctgcaaaggttggttcatcgtgaaccatggaaccaagatgca
cgctacctgcttgtccttgctattttccagaaggcacgtgaagagaagtaccccaaacat
atctgtatcattctgaagaggctcattttgcaagtgctatccaacattagcaattcacgt
gagaacaaagttgtgcagcatgaggtgttcttgcttcttcttttatcttcagaaatctgt
ttgcaatatttagactatgagaattgcattggtcaagctaaagaagctctaagaatgact
gcctctagctgtgttgatactttctttgcacacttgcaactgtgtcgggcctatgcagtg
caaggggatcttttgaactccaggaatgagtacatgaactgcttgaaaaaccatacgaat
attgagatgggttgggtaattctgaagcaccttgaatctgcatgttcattggaggcctct
tctgatgaaatagatataaatcttcgtgagtgcattaaaaggaatggcagtgacccatcg
aaatggatgtctcttttcaatctagtctgtgctcagtgctttgtatgggacgaaaacttt
gcaagtgctgaaaaagctcttgctcaggcatgcgctgaaggagatcccgatagctgcatc
ttattcttcaatggtgcaacatgtatggaaattgcccggaggtttgcagctcctcaattt
atatcccgtgcatcttccagcctcagaaaggcccagcagaaatcacatgcttcgttacct
ctggtgtcacttctactggcacaagccgagggcagccttggctccaaaaccaagtgggag
aagaaccttcgcctggaatggttctcatggcccccagaactgcggcctgcggaggtgtac
ttccaaatgcacctgctggcgaggcagtcggccgctgccgctttccagcagaaccagctg
gtggagacgatgcagaaccccgagagctggcttcttcgggcgattcacctgaacccgtcc
tgctcccggtactggaaggctctgatgcagcttatggacgcgtaa
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