Setaria italica (foxtail millet): 101755575
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Entry
101755575 CDS
T02818
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101755575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101755575
Enzymes [BR:
sita01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101755575
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101755575
mRNA degradation factors
3'-5' decay
Ski complex
101755575
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
ResIII
Motif
Other DBs
NCBI-GeneID:
101755575
NCBI-ProteinID:
XP_004951843
LinkDB
All DBs
Position
I:7211518..7228970
Genome browser
AA seq
1372 aa
AA seq
DB search
MDGPDPSPASELPFRISFSGHGGHLRLDPTPQPSSAIPDFVPPPAYPPGSPSSVKEYLEA
NYLNPELHLPTAADAGRVWDLDWFALAKPPLEPSAPRTMLAPAWEPPFRRGRGTSQSASE
PQVWDPESVQMEMGEVFGSGTGGLAPRMPGPAKDFVRGSINNRPFRPGGLLDDDAEVAAL
EKAFPEGARNGDWVHELMTGGPAQVAPPGFRKGLELGPLKEYKSHWKCFRNGELVEEQPA
SSSNDTMEKYSVQFDDLFKIAWEEDAANKALQEDDVQQSAEDEGTEGVGEQKVDALQDAS
ETVTKLDAEKHEVDAISDDPGTQTDLDLMLSAEVQYARRESGVSGDDKPTQDGKVWALVG
GDEDIVTNFYKLVPDMAIEFPFELDKFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFA
LATKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSIRPEATCLIMTTEILRSMLY
RGADIIRDIEWVIFDEVHYVNDAERGVVWEEVIIMLPKHINIVLLSATVPNTVEFADWIG
RTKQKKIRVTSTNKRPVPLEHCLFYSGEVYKICERDTFLTQGFREAKDSFKKKNSNKLGV
KPGPKSGTPAVRAGTQGKNPDTSNRGRDQKYPKHHNANSGSAVVSQSSSGPKRPDSSFWM
PLVNNLLKKSLVPVVIFCFSKNRCDRSADSMFGADLTSSSEKSEIRVFCDKVFSRLKGSD
RNLPQVVGIQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPART
VVFDSLRKFDGKEHRKLLPGEYIQMAGRAGRRGLDNIGTVIIMCRDEIPEESDLKNLIVG
KPTRLESQFRLTYTMILHLLRVEELKVEDMLKRSFAEFHAQKNLPEKEKLLLQMLRQPTK
TIDCIKGEPSIEEYYEMALEAEAHRESITEAIMQLPSTQQFLMPGRLVVVKSESDDDHLL
GVILKCPSQTLNKYIVLVLTGDCTSSALSPVLSNKTEKEPGDFQQGHFIIPKGKRGMEDE
YFSSGSSRKGSVVIKIPLPYKGDASGMGFEVRAIEKKEIMSICTCKIKIDQVKLLEDCSK
AAYSKTVQLLIKEQPDGTKYPPALDAIKDLKLRDMHFVERYIAYHRLLQKMSENKCHGCI
KLKEHISLMREQKMYKDQLNELKFQMSDEALQQMPEFQGRIDVLKVINYIDSDLVVQLKG
RVACEMNSGEELISTECLFENQLDDLEPEEAVAIMSAFVFQQRNASEPSLTPKLAEAKKR
LYDTAIRLGQLQAQFKVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVSEGLI
VRTIVRLDETCREFRNAASIMGNSALYKKMEVASNAIKRDIVFAASLYVTGI
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggacggccctgacccctcgccggcgagcgagttgccgttccgcatcagcttctccggc
cacggcggccacctccgcctcgaccctaccccgcaaccgtccagcgccattcccgacttc
gtcccgccgccggcctacccgcctgggagcccgagcagcgtgaaggagtacctcgaggcg
aactacctcaaccccgagctccacctccccaccgcggccgatgccgggagggtgtgggac
ttggactggttcgccctggccaagccaccgctggagccctccgctccccgcaccatgctc
gcgcccgcctgggagccgcctttccggcgcggtcgggggacgtcgcagtccgcgtcggag
ccgcaagtatgggatcctgagtccgtgcagatggagatgggcgaggtgttcggttcgggg
accggggggttggcgccgcggatgcctggtccggcgaaggacttcgtcagggggagcatc
aacaacagaccctttcgtccgggtggtctactggatgatgatgctgaggtggctgcattg
gagaaggcattcccagagggtgcgcggaacggtgattgggtgcatgagcttatgaccggt
ggcccggcgcaggttgctcctccggggttccgcaagggattggagttgggcccgttgaag
gagtataaaagccactggaagtgtttccggaatggagaacttgtagaggagcaacctgca
tcgtcatcgaatgatacaatggaaaaatactcggtgcagtttgatgatcttttcaagata
gcttgggaggaagatgccgccaacaaggcgttacaggaggatgatgttcaacaatcagct
gaagatgagggaactgaaggagttggcgaacaaaaagttgatgcattgcaagatgcttct
gagaccgtaaccaagctagatgctgagaaacatgaagtagatgctataagtgatgatcct
ggaactcaaacagacttggatctaatgctatctgctgaagttcaatatgcacgaagagaa
tcaggtgtatcaggtgatgacaagccaacacaggatggcaaggtttgggcacttgttggc
ggggacgaagacattgtgactaacttctacaaactcgttcctgatatggcaattgaattt
ccatttgaattagataagttccagaaggaggctatatattatcttgagaagggtgaatca
gtcttcgttgcagcccatacttcagcaggaaagacagttgttgccgagtatgcatttgct
ttagcaacaaaacattgtactcgggctgtctatactgctcctattaaaactatcagcaac
cagaaataccgagatttctctgggaagtttgatgtaggacttctgacaggagatgtcagt
atcaggccagaggcaacttgtttaattatgactactgaaatattgcgctcaatgctctac
agaggtgcggacattatacgcgatattgaatgggtaatctttgatgaagtgcattatgta
aacgacgctgaaagaggtgtagtttgggaggaggttattataatgctcccgaagcacatt
aacattgttcttctttcggcaacggttccaaatacagttgaatttgctgactggattggt
cgaacaaagcagaagaaaattcgtgtcacttcgaccaacaaaaggcctgttccgcttgag
cattgcttgttctactctggagaagtgtacaaaatatgcgagagggatacctttcttact
caaggatttagagaagcaaaagattctttcaaaaagaaaaattcgaacaagcttggagtg
aaacctggtccaaagtcaggaacccctgcagtacgtgctggaactcaaggcaaaaaccca
gatacatcaaacagggggagagatcagaagtacccaaagcaccacaatgccaattcagga
tcagcagtggtttcacaaagctcctcagggccaaagagaccagactcttcattttggatg
ccgcttgtgaataaccttctgaagaaatccctagtgcctgtggtgatcttttgtttctca
aagaatcgttgtgatagatcggcagatagcatgtttggcgctgatctcaccagtagttcg
gagaaaagtgaaatccgtgtcttctgtgacaaggtgttttcacgccttaaaggatctgat
aggaaccttccacaggttgtgggaatacaaagccttctacgaagaggaattggagtgcac
catgctgggcttctccctattgtgaaggaagtagttgagatgctattctgtcgtggtgtg
atcaaggtactgttttccactgaaacatttgcaatgggtgttaatgcaccagcaagaacg
gttgtatttgattccttaagaaagtttgatggaaaagaacaccgaaaattgcttccaggg
gagtatattcaaatggctggacgagctggtaggagaggacttgataacattggtacagtg
atcattatgtgtcgtgatgaaattcctgaagaaagtgatttgaaaaatttgattgttgga
aaaccaactcgattggaatctcaatttcgattaacatacactatgatactacatcttcta
cgtgtggaggagctgaaggtcgaggacatgctcaagagaagttttgcagaattccatgca
caaaagaatttgccagagaaggaaaagctacttctacaaatgcttcgtcaacctacaaag
acaatagattgcataaaaggagagccttcaattgaagaatactatgagatggcattagaa
gctgaggcacatagggaatctataacagaagcaattatgcagttgcccagtactcaacag
ttccttatgcctgggagattggtggtcgttaaatctgaatctgatgatgatcacttactt
ggtgttatactgaaatgtccatctcaaacactaaataaatacattgtccttgtattgact
ggtgattgcacttcatctgcattatcccctgtgttgtccaataaaactgaaaaggaacct
ggggatttccaacaaggacactttattatcccgaaaggaaaacgcggcatggaggatgag
tatttctcatctggcagctcacgaaaaggttcagttgttatcaaaatccccctaccatac
aagggggatgcatctggaatgggctttgaagtaagagcaatagagaaaaaagagatcatg
agtatatgcacctgcaaaataaagattgatcaagtcaaactccttgaggattgtagcaaa
gctgcttactccaaaactgtccaactgcttataaaagagcaaccagatggaactaagtat
cctcctgctttagatgcaataaaagatctaaaattgagggacatgcattttgttgaaaga
tacattgcatatcacagactactgcaaaaaatgtctgaaaacaagtgccatggttgtata
aaactaaaggagcatatatcattgatgagggagcaaaagatgtacaaggatcagctgaat
gaattgaaattccagatgtcagatgaggcgcttcaacagatgccggagtttcaaggcaga
attgatgtactaaaggtaatcaactacattgattctgatctagttgtgcaacttaaggga
cgagtagcctgtgaaatgaactcaggagaggagttaatatccacagaatgtctgtttgag
aatcaattggatgacctagaacctgaagaagctgtggccattatgtctgcatttgtcttc
caacagaggaatgcatcagaaccatctcttactccaaaattggctgaagccaaaaagagg
ctttatgacacggcaatcagactaggacagctccaagcacagttcaaggtgcctgtggat
cccgaggagtatgcacgtgacaatctcaagtttggccttgttgaggttgtctacgagtgg
gcaaagggaacacctttcgccgacatatgtgagctgacagatgtatccgaggggctcatt
gtaagaacgatcgttcggctggatgaaacatgcagagaattcaggaatgcagcttcgata
atggggaactctgcgctgtacaagaagatggaggtcgcgtccaatgctattaagcgtgac
attgtgtttgcagcaagcttgtatgtcacaggaatctga
DBGET
integrated database retrieval system
