KEGG   Setaria italica (foxtail millet): 101755743
Entry
101755743         CDS       T02818                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
sita  Setaria italica (foxtail millet)
Pathway
sita03013  Nucleocytoplasmic transport
sita03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sita00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101755743
  09122 Translation
   03013 Nucleocytoplasmic transport
    101755743
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sita03019]
    101755743
   03041 Spliceosome [BR:sita03041]
    101755743
Messenger RNA biogenesis [BR:sita03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     101755743
Spliceosome [BR:sita03041]
 Complex C
  Other components
   EJC/TREX
    101755743
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    101755743
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40 WD40_WDHD1_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WDR55 Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_Aladin Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_HPS5 DSE1_N Tricorn_2nd Beta-prop_WDR35_TULP_N Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_Vps41 WD40_RFWD3 Beta-prop_DCAF12 Beta-prop_IFT140_1st NBCH_WD40 B-prop_COPA_B_2nd WD_LRWD1 TRM82_WD WDR90_beta-prop_4th
Other DBs
NCBI-GeneID: 101755743
NCBI-ProteinID: XP_004956508
UniProt: K3ZV23
LinkDB
Position
II:25086973..25093755
AA seq 334 aa
MEGKEEERKGSGGAAAAAGGVSTPGANLKDLVSREYYGHKKKVHSVAWNCLGTKLASGSI
DHTARVWSIDPHGHSKVKDIELKGHTDSVDQLCWDPNHPDTVATAAADKSIRLWDARSGK
CQVIELSGENINITYKHDGTQIAVGNKEDELTILDVRSLKVVKKHKANYEVNEIAWNKAG
DLFFITTGLGHIEVVKDLEFLKPCKLNAHTAGCYCIAMDPLDRYFAVGSADSLVSLWNVK
ELLCIRTFTKLEWPVRTVSFNHTGEFIAYASEDPFIDIANVETGRSVHQIPCKAAMNSVE
WNPKYNLLAYAGDDKNKYQADEGVFRIFGFETHN
NT seq 1005 nt   +upstreamnt  +downstreamnt
atggagggcaaagaagaggagcggaagggcagcggtggcgccgccgccgccgccggcggc
gtctcgacccccggggcgaacctgaaggacctcgtttcgagggaatactacggccacaag
aagaaggtgcactctgtagcatggaactgcctaggcacaaagcttgcttcaggatcgatt
gatcatactgcacgtgtttggagcattgatcctcatggccattcgaaggttaaagatatt
gaactgaaaggccacacagatagtgtagatcagctatgctgggatccaaatcatcctgat
acagttgctactgcagctgctgacaagtctattcgtctttgggatgctcgaagtggaaaa
tgtcaagttattgaactgagtggagaaaacatcaacatcacatataaacatgatggtact
cagatagctgttggaaacaaggaggatgaactgacgattttggatgttcggtcattaaaa
gttgttaaaaaacacaaggctaattacgaggtgaatgagattgcatggaataaagctgga
gatctattcttcatcactactgggctaggacacattgaggtggttaaggatcttgagttt
ttgaagccctgcaaattgaatgctcatacagcagggtgttattgcattgcaatggatccc
cttgataggtacttcgctgttggaagtgcagattcacttgtcagtctttggaatgtcaaa
gagttgctatgcattagaaccttcacaaaacttgagtggccagtaagaacagttagcttc
aatcatactggagaattcattgcatatgccagtgaagatcctttcattgatattgcgaat
gttgagactggacgatctgttcatcagattccttgcaaagcagctatgaacagtgttgaa
tggaatcctaagtacaacctcctggcctatgcaggagatgacaaaaacaaataccaagct
gatgaaggtgttttccggatatttggctttgaaacacataactga

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