Setaria italica (foxtail millet): 101755743
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Entry
101755743 CDS
T02818
Name
(RefSeq) THO complex subunit 3
KO
K12880
THO complex subunit 3
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03013
Nucleocytoplasmic transport
sita03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101755743
09122 Translation
03013 Nucleocytoplasmic transport
101755743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101755743
03041 Spliceosome [BR:
sita03041
]
101755743
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
101755743
Spliceosome [BR:
sita03041
]
Complex C
Other components
EJC/TREX
101755743
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101755743
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WDR55
Beta-prop_WDR19_1st
Beta-prop_NOL10_N
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_Aladin
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
DSE1_N
Tricorn_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_IFT140_1st
NBCH_WD40
B-prop_COPA_B_2nd
WD_LRWD1
TRM82_WD
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
101755743
NCBI-ProteinID:
XP_004956508
UniProt:
K3ZV23
LinkDB
All DBs
Position
II:25086973..25093755
Genome browser
AA seq
334 aa
AA seq
DB search
MEGKEEERKGSGGAAAAAGGVSTPGANLKDLVSREYYGHKKKVHSVAWNCLGTKLASGSI
DHTARVWSIDPHGHSKVKDIELKGHTDSVDQLCWDPNHPDTVATAAADKSIRLWDARSGK
CQVIELSGENINITYKHDGTQIAVGNKEDELTILDVRSLKVVKKHKANYEVNEIAWNKAG
DLFFITTGLGHIEVVKDLEFLKPCKLNAHTAGCYCIAMDPLDRYFAVGSADSLVSLWNVK
ELLCIRTFTKLEWPVRTVSFNHTGEFIAYASEDPFIDIANVETGRSVHQIPCKAAMNSVE
WNPKYNLLAYAGDDKNKYQADEGVFRIFGFETHN
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggagggcaaagaagaggagcggaagggcagcggtggcgccgccgccgccgccggcggc
gtctcgacccccggggcgaacctgaaggacctcgtttcgagggaatactacggccacaag
aagaaggtgcactctgtagcatggaactgcctaggcacaaagcttgcttcaggatcgatt
gatcatactgcacgtgtttggagcattgatcctcatggccattcgaaggttaaagatatt
gaactgaaaggccacacagatagtgtagatcagctatgctgggatccaaatcatcctgat
acagttgctactgcagctgctgacaagtctattcgtctttgggatgctcgaagtggaaaa
tgtcaagttattgaactgagtggagaaaacatcaacatcacatataaacatgatggtact
cagatagctgttggaaacaaggaggatgaactgacgattttggatgttcggtcattaaaa
gttgttaaaaaacacaaggctaattacgaggtgaatgagattgcatggaataaagctgga
gatctattcttcatcactactgggctaggacacattgaggtggttaaggatcttgagttt
ttgaagccctgcaaattgaatgctcatacagcagggtgttattgcattgcaatggatccc
cttgataggtacttcgctgttggaagtgcagattcacttgtcagtctttggaatgtcaaa
gagttgctatgcattagaaccttcacaaaacttgagtggccagtaagaacagttagcttc
aatcatactggagaattcattgcatatgccagtgaagatcctttcattgatattgcgaat
gttgagactggacgatctgttcatcagattccttgcaaagcagctatgaacagtgttgaa
tggaatcctaagtacaacctcctggcctatgcaggagatgacaaaaacaaataccaagct
gatgaaggtgttttccggatatttggctttgaaacacataactga
DBGET
integrated database retrieval system