Setaria italica (foxtail millet): 101755895
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Entry
101755895 CDS
T02818
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03013
Nucleocytoplasmic transport
sita03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101755895
03015 mRNA surveillance pathway
101755895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101755895
Enzymes [BR:
sita01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101755895
5.6.2.5 RNA 5'-3' helicase
101755895
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101755895
mRNA cycle factors
Common to processing body (P body) and stress granule
101755895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
nSTAND3
Helicase_RecD
ATPase
SRP54
PhoH
AAA_16
AAA_32
AAA_22
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
101755895
NCBI-ProteinID:
XP_004957770
UniProt:
A0A368Q519
LinkDB
All DBs
Position
II:41064198..41074584
Genome browser
AA seq
1277 aa
AA seq
DB search
MATQPPSSAAAAAAAADLYETASQPDPSASAAGDAYTFLEFNTQGDDFDYPDFPELSQPP
PRSAPLPPVTATAASSSSWPAPPPPPPDAASPEPDLAPPDVPTPPASSSSPSPRSASKAR
TSAAADGLASGVAALSFEEPVGAGAGEDGYDYGKGDFVEHACRYCGIHNPACVARCNVPS
CRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISA
KSENVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLSWLVKVPSEQEQLRARQISA
QQINKVEELWKTNPDASLEDLEKPGVDDEPQSVVLKYEDAYQYQNVFAPLIKLEADYDKM
MKESQSKDNVTVRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYPGDSSHPTWQSVG
HVIKLTAQEEVALELRASQGVPTELSVGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGY
IYHHLLGHEVEHQIIRNTLPRRFGAPGLPELNASQVLAVKSVLQKPVSLIQGPPGTGKTV
TSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLT
LHYQVKHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKSLKRATEREILQSADVICCTCV
GAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARA
GLAQSLFERLVILGVKPFRLQVQYRMHPCLSEFPSNCFYEGTLQNGVTVNERQSSGIDFP
WPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEG
QRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRR
LNVALTRARYGIVILGNPKVLSKQLLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKK
IYNERRLFLGGGQGVMQGANFGAGASPAGDKRSGRGKGQSFVPYGPPNGVHKPGVHPAGY
AVPRMPFPPFPGAPHSQPYAIPTRGLHGPIGAVPPVPQPGSRNFGAPRSNTGGPIGGHLA
HQQNSQQAMGGMGSNFNYAGLENPSSQPSGGAQMSQTGLMTQMPVQGLSQTFRDGFSIGG
MSQDFFGDDFKSQGSHVPYNIADFSTQASQGGGYGVEFTQAPQSGYTGNYMNQNAHPGYS
HIGTTNDIVSQDHMAHGSHGMFTQAGYNDPSQDESSQMHYGMASAGPLQSQSMMNPLYSQ
SYAHYNTQPQSLQPPPQ
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcagccgccctcctccgccgccgcggcggccgcggccgccgacctctacgag
acggcctcgcagccggacccctccgcctccgccgccggcgacgcctacaccttcctcgag
ttcaacacgcagggcgacgacttcgactaccccgacttcccggagctctcccagccgccg
ccccgatccgcgccgctgccgcccgtcaccgccaccgcggcgtcctcctcgtcgtggccg
gcgccgccgccgccgccgcccgacgcggcctccccggagcccgatctcgcgccgccggac
gtccccaccccgccggcctcctcctcctcgccgtcgccgcgctccgcctccaaggcgcgg
acgtctgctgcggcggatgggctcgcctccggggttgccgcgctcagcttcgaggagcct
gtgggcgccggcgccggggaggacgggtacgactacggcaagggcgacttcgttgagcac
gcctgccggtactgcgggatccacaaccccgcttgcgtggctaggtgcaacgtgccatcc
tgccgcaagtggttctgcaactcgcgagggaacacctcaggctcccacattgtcaaccac
ctggtcagggcaaagcataaggaagtgtgccttcacaaggatagccctttgggagaaaca
attcttgaatgctataactgtggctgtagaaatgtatttcttcttgggtttatctcagca
aagtcggagaacgttgttgttcttttgtgcagagagccatgtttgagtgttaatgcattg
aaggatatgaattgggatctcagtcagtggtgtcctcttattgatgacaggtgtttcttg
tcatggcttgtaaaggtaccctcagaacaggagcagctaagagctcgtcaaattagtgct
cagcaaattaacaaagtggaagagctctggaagacaaatcctgatgcctcccttgaagat
cttgaaaagcctggtgtagatgatgaacctcagtcagtggttttgaagtatgaagatgct
taccagtatcaaaatgtttttgctccgctgataaaactcgaggctgattatgataagatg
atgaaagagtcgcagagcaaggataatgtaactgttcggtgggatattgggctgaacaag
aagcgtgtagcttactttgtctttccaaaggaagataatgagttgaggcttgtgcctgga
gatgagctgcgcttgagatatcctggtgatagctcacatcccacatggcagtctgtgggg
catgtgattaagctcactgcacaagaggaggtggcacttgagcttcgtgctagtcagggg
gtacccactgaactaagcgttggattcagtgtggattttgtttggaagagtactagcttt
gatagaatgcaaggagcgatgaaaacttttgccgtggacgagacaagtgtcagtggatac
atataccatcatcttttgggacatgaagttgagcatcaaataatacgtaataccctacca
agacgctttggtgcaccaggacttccagagctaaatgcttcccaggttttagcagttaaa
agtgtcctccagaagccagttagtttgattcaaggaccacctggcactggaaaaactgtc
acatctgctgcaattgtgtatcacatggcaaaacaaggtcaaggacaggttcttgtatgt
gcaccaagtaatgttgctgttgatcaactggcggagaagataagctcaactggtcttaag
gttgttaggttgtgtgcaaaatctcgagaagctgtttcatctcctgttgagcatcttaca
cttcattatcaggttaagcaccttgatacatctgaaaagagtgaattgcacaagctacag
caactgaaagatgagcaaggtgaattgtctagcagtgatgagaagaagtacaagtcacta
aaacgtgccactgaaagagagatacttcagagtgctgatgtcatttgttgcacctgtgtc
ggtgctggagatccccgtctttcaaacttccgtttccgacaagttcttattgacgagtcc
acacaggcaacagagcctgaatgccttattcctttggtgcttggtgtcaagcaggttgtt
cttgtcggagatcattgccaactgggtccagtcatcatgtgcaaaaaagcagctcgtgca
ggtctagcgcagtctctgtttgaacgccttgttatcctgggagtgaaaccattcaggcta
caggtccagtatagaatgcatccttgcctctcagaatttccgtccaactgcttctatgaa
ggcacactgcaaaatggagttactgttaatgagaggcaatcatctggaattgattttcct
tggcctgttccaaatcggcctatgttcttctatgtgcagatgggacaagaagagatcagt
gctagtgggacatcatacctcaatagaaccgaagctgcaaatgttgaaaaaattgtaaca
acatttttaagaagtggtgttgtaccaagccagattggagttatcacaccttatgaagga
caaagggcatacattgtaaattatatgtcaaggaatggctctcttcgccaacaactttac
aaggaaatcgaggtagcgagtgtagactcatttcagggaagagagaaagactacattatt
ctgtcctgtgttagaagcaatgagcaccagggaattgggtttctcaacgatccacgcagg
ttaaatgttgcgctaactcgtgcacggtatggcatagttattcttggtaatccaaaagta
ttgagcaaacagctcctttggaatagcttgttgacgcattacaaggagcatgagtgtttg
gtagaaggacctttaaacaacttaaagcagagtatggtgcaatttcagaagccaaaaaag
atctataatgagcggaggttgttcctgggcggtggtcaaggtgttatgcagggagccaac
tttggggctggggccagcccagcaggagataagagaagtggtagggggaaaggacaatca
tttgttccttatggcccaccaaatggagttcataagcctggtgtgcacccggcaggctat
gctgtacctcgtatgccttttcctccatttcctggggctccacattctcaaccatatgca
attccaacccggggattgcatgggcccattggagctgttccgccggtgcctcaacctgga
agtagaaattttggggcacctcgttccaacacgggtggtcctattggtggtcatcttgct
catcaacagaactctcagcaggctatgggtggcatggggtcaaattttaactatgctggc
ttggagaatcctagcagtcagccttctggtggagcccaaatgtcccaaactggattaatg
acacagatgcctgtccaaggactcagtcaaacattccgtgatggtttttccattggtggc
atgtctcaggacttcttcggagatgatttcaagagccaaggatctcatgtgccatacaac
attgcagatttctctacccaggcttctcaaggtggtggttatggtgttgagtttactcaa
gcaccccaatctggatacactggaaattatatgaaccaaaatgcacatccaggatactcc
catattggtacaaccaatgacattgtatctcaggatcacatggcccatggatctcatgga
atgtttacacaagcgggatataatgatccctctcaagatgagtcatctcagatgcattac
ggaatggcttctgctggccccctccagtcacagagcatgatgaaccccctatactctcaa
tcctatgcccattataacacccaaccacagtctcttcaacctcctccgcagtga
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