Setaria italica (foxtail millet): 101756087
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Entry
101756087 CDS
T02818
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein NUP155-like
KO
K14312
nuclear pore complex protein Nup155
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101756087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101756087
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101756087
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nucleoporin_C
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
101756087
NCBI-ProteinID:
XP_012698432
LinkDB
All DBs
Position
IX:complement(52531870..52542123)
Genome browser
AA seq
1466 aa
AA seq
DB search
MAWEEDEAIGPDVASAGLHVSEQIGRNAAAQPDLEEALEASRYSSHPYSSHPKEWPPLVE
IAETRQLPPMLIERYNAAAGEGTALCGIFSDIHRAWATVDNSFFIWRFDKWDGQCQDYNV
DEQAICAVGLARAKPGIFVEAIQYLLVLATPVELVLVGVCCSASADGTDPYAELSLQPLP
EYMIATDGVTVTCITCTDKDQIFLAGRDGHIYELQYTTGSGWRKRCRKVCLTTGIGSLLS
RWVLPNAFKFSTVDPIVDMVIDDERNTIYARTEGMKLQLFDLGANGDGPLTKVTEEKNIV
DPRDAPYGGRRSNAQNSARSPKPSIVCISPLSSMESKWLHAVALFLTTSGGNGSSVGLSS
SLQRPTCLKIVATRPSPPLGVGGGLTFGAVSAAGRAHPEDLALKVESAFYSAGALIMSDS
SATAMSSLLAVQKDSAAQLSLPSTFGTASRSSRALRETVSALPVEGRMLCASDVLPLPDA
AFTVQSLYADVECFTSFRKPSEKASIKLWAKGYLPTQHILPRRRVVVFNTMGLMEVIFNR
PVDILRKLFDGNTLRSQIEEFFNRFGAGEAAAMCLMLAAKLLYAEDSLISNAVSEKAAEA
FEDPGLVGMPQIDGTTALSNTRTQAGGFSMGQVVQEAEPLFSGAYEGLCLCSSRLLYPIW
ELPIMVIRGPAGANEHEDGIVVCRLSAGALKILESKIRSLETFLRSRRNKRRGLYGYVAG
LGDSGSILYKTGPIMGSGGRGNGRSPYNSQIRDMNPTDQSASSKKPRLVYTSAELAAMEV
RAMECLRRLLRRSGEALFLLQLVCHHNVVRLAQTLGNDLRKKLVQLTFHQLVCSEDGDQL
AMRLISALMEYYIGPEGRGTVEEISTKLREGCPXYFNESDYKYYLAVECLERASMTNNPD
ERDILARDAFNLLTKIPDSADLSAICKRFENLRFYEAVVRLPLQKAQALDSNADVINGQI
DPRHHDMITLQREQCYEIVMNALRTLKGVGQGADKSSGLATAVDPASRSKYIKQIIQLSV
QWPDTVFHEHLYRTLIELGLENELLEYGGSDLVSFLQSAGRKHQEEVRAVSSLTSGAAKL
QDLGAPISTSQTKYLELLARYYVLKGEHIAAARMLLILAERQCSNSEEAPTLDKRYEYLR
NAVLQAKSAGIAADSSXNPIDSSTVDLLEGKLAVLRFQMQIKQELELMAARVENILSNSE
SPNDPFPGDNILADAEAAKAAKDKAKELSLGLKSITQLYNDYAVPFNLWEVCLEMLSFAN
YSGDADSKIVREIWARLLDQALTREGVAEACSVVKRVGSKLDPADGACLPLDIISLHLEK
AALDRLSSGEELVGDDDVARALLGACKGLPEPVLAVYDQLLSNGAIMPSLNIKLRLLRSV
LAILREWGMSVIAHRLGTTSAGASFFFDGTFSLNQTGTANQGARDKIISLANRYMTEVRR
LNLPQNQTENVYRGFRELEEKLLSPY
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atggcatgggaggaggacgaggccatcggccccgacgtggcctcggcggggcttcacgtc
tcggagcagatcggccgcaacgccgccgcacagcccgacctagaagaggccctcgaggca
tcgcgctactcgtcccacccctactcctcgcaccccaaggagtggcctcctttggtggaa
attgctgaaactcgtcagctccctcctatgttgattgaaagatacaatgctgcagccggt
gaaggaacagccctttgtgggatcttttctgacatacaccgggcctgggcaacggttgat
aattcatttttcatctggcgttttgacaaatgggatgggcagtgtcaagattataatgtg
gatgagcaagcaatttgtgctgttggccttgctagggcaaagcctgggattttcgttgaa
gccattcaataccttttagttttagcaactcctgttgagctggtacttgttggagtttgc
tgttctgctagtgctgatggaacagatccgtatgctgagctttcattacaacctttacct
gagtacatgattgccactgatggtgtcactgtgacatgcatcacatgtacggataaggac
caaattttcctagctggacgtgatgggcatatatatgaattgcagtatacaactggctca
ggctggcgtaaacgctgccgtaaagtttgtcttactactggtattggcagccttctttcc
aggtgggtcctgccaaatgcattcaaattctcaactgttgatcctattgttgatatggtc
atcgatgacgagaggaacactatctatgctcgcaccgaaggcatgaaattgcagttattt
gatttaggagctaatggcgatggccctttgacaaaagttacagaagaaaagaacattgtt
gatccacgggatgcaccttatggtggtcgaaggtctaacgcacaaaactctgcacgatca
ccaaaaccatcaattgtctgcatctcacctctatcgtctatggaatcgaaatggcttcat
gctgttgctttatttcttaccacgtcaggtggaaatggttcttcagttggattgagcagt
agtttgcagaggccaacctgtttaaaaattgttgctactaggccgtccccacccctgggg
gttggtggtgggcttacatttggtgctgtttctgcggctggcagagctcatcctgaggat
ctagctttaaaagttgagtctgcgttctattctgctggtgctcttataatgtcagattca
tctgctacagccatgtcatctcttctggctgtgcagaaagattcagctgcgcagttatcc
cttccgagtacgtttggaacagcttctagaagctcccgagctctacgagaaacagtctct
gctttgcctgttgagggtcgaatgctttgtgcctctgatgttctcccacttccagatgct
gctttcacggtgcagtctttatatgctgatgtggaatgcttcacaagtttcagaaaacct
tctgagaaagcatctataaaactgtgggcgaaaggatatcttcctacccagcatatctta
cctcggaggagggttgttgtattcaatacaatgggtttgatggaggtaatttttaacagg
cctgttgatattctaagaaaattgtttgatgggaacaccttgagatcgcaaattgaagaa
ttctttaatcgctttggcgctggagaagctgcagcaatgtgcttaatgctagccgcgaag
ctactttatgctgaagatagtctgataagcaatgctgtttctgagaaagctgctgaggca
tttgaggaccctggacttgttgggatgcctcaaattgatggcaccactgctttatctaat
acacgaactcaggctggaggctttagtatgggtcaagttgttcaagaagcagaacctttg
ttttccggtgcatatgaagggctctgtttgtgctcttcaagactactctatcccatatgg
gagcttcctattatggtgattcgaggacctgctggtgctaatgaacacgaggatggcata
gttgtttgcaggctgtcagctggggccttgaaaattcttgagagtaagatacgttcactg
gaaacatttttaagatctagaagaaacaagagaagaggcctgtatggttatgttgctggc
ctgggcgattctggttcgatactctacaaaacaggtcctattatgggttctggggggcgt
ggcaatggaaggagtccgtacaactcccaaattcgagatatgaaccccaccgatcaatct
gcatcaagtaaaaagccaaggctggtttatacatcagcagaactagcggctatggaggtg
agggcaatggaatgtcttaggcggttgcttaggagatctggtgaagcactctttctgctt
caacttgtttgccatcataatgttgtccgcttggctcagacactgggcaatgatttacgc
aagaaattagttcaattaacgtttcatcaattggtatgttcagaggacggcgaccagctt
gcgatgcggcttatttctgcactcatggagtactatattggcccagagggcagaggaact
gttgaggaaatcagtactaaattgagggagggttgccctnattacttcaacgagtcagac
tacaaatattacttggcagtggaatgtcttgagagagcatctatgactaataaccctgat
gaaagagatattcttgctagagatgctttcaacctcttaactaagataccagactctgct
gatttgagtgccatctgcaagagatttgagaacctaagattttatgaggctgtagtccgg
ttgcctctgcagaaagctcaagcacttgactccaatgctgatgttatcaatggtcaaatt
gatccaaggcatcatgatatgataacgttgcagcgtgaacagtgctatgaaatagttatg
aatgctctacgcaccctcaagggtgttgggcaaggtgcagataagtcatctggtttagca
actgctgttgatccagcttctcgaagcaagtatatcaaacagatcatccaacttagcgtc
caatggccggacacagttttccatgagcatctatacaggacactgatcgagctcggtcta
gaaaatgagcttttggagtatggtggttctgatttggtttcttttctgcagagtgctggt
cgtaagcatcaagaagaggttcgggcagtttcttcacttacatcaggagctgctaagttg
caagatttaggtgcacctatctcgactagccaaacaaagtatcttgagctcctagcaagg
tactatgttcttaagggggagcatattgctgctgccaggatgttgttaatattggcagag
agacaatgctccaattctgaagaagcacctactcttgacaagaggtacgaatatctcaga
aatgcagtgcttcaggccaaaagcgcaggcatcgctgctgattcatccnagaatcctatt
gatagtagcacagtggatttgcttgaaggcaaacttgcagtgcttcgcttccaaatgcaa
atcaaacaagaactggagctcatggcagcacgggttgaaaatattctgagcaattctgaa
tcaccaaatgatccgttccctggtgacaacattcttgctgatgcagaggctgctaaagct
gccaaagataaggcaaaagagctttcattgggtctcaagagtatcactcaactatataat
gactatgctgttccgtttaatctctgggaggtttgcctggaaatgctgagcttcgctaat
tactctggagatgctgatagcaaaattgttcgagaaatttgggccagactccttgaccag
gcacttacaagagagggtgttgcagaagcatgttctgtggtgaaaagagttggctcgaaa
cttgatcctgcagatggagcttgtttgcctttggatataatatcccttcatcttgagaag
gctgcattggatagattaagttcaggagaagaattagttggcgatgatgatgttgcaaga
gctcttcttggtgcctgtaaaggtcttcctgaaccagtgcttgctgtgtatgatcagctg
ttatcaaatggggcaatcatgccttcacttaatataaagctgcgccttttgagatcagtt
cttgcgatccttcgtgagtgggggatgtctgtcattgcacatagactaggcaccacaagt
gctggggcttcattcttttttgatggaacattttcactgaatcaaacaggaactgcaaat
caaggtgctcgagataaaataattagtttggcgaacaggtatatgactgaagtgaggcga
ttaaaccttccacagaaccaaacggagaatgtctaccgtggtttccgtgagcttgaggag
aaattactctcaccttattag
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