Setaria italica (foxtail millet): 101756392
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Entry
101756392 CDS
T02818
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101756392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sita03021
]
101756392
03019 Messenger RNA biogenesis [BR:
sita03019
]
101756392
Transcription machinery [BR:
sita03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101756392
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
101756392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-C2H2_2
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
101756392
NCBI-ProteinID:
XP_004972696
UniProt:
K3YG34
LinkDB
All DBs
Position
VI:3008605..3017558
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AA seq
961 aa
AA seq
DB search
MAGAPAAGQVVERFRARLREEAGGAGGEPGAAAVVRVYAEALRELTFNCKPVITELTIIA
GQHAALAARGIADAVCARVAEVPPDQILPSLYLLDSIVKNIGREYVDRFAARLQKVFVDA
YCRVHPSQYASMRRLFRTWWPVFPSSVLRGIEDDLQFSPSQEKRPAIATNPHQSESLSPR
PSHGIHVNPKYLEAQQKLKQANVMHQPAVRGTRQMADVEEDLINGLTSNGLRGRPSMFQK
STVQYADDPDQQDTLRSLAGTIRATSPHLLSAHPSDAILDGPLDTSRRNLSRSPPLDVFP
RNASPKRVLERLPPSRSILGPDPRRLPDRNGRSRWTFDDGARRPTISMLDEEYRKQSARE
LIDAYGNSQGRDADERVSKMQRLDSNGMASARNWLTSEEEEYSWEDMSPTLTDRIRSSVP
SFPPGTMRAGFPGAKAGLLESDIGRHNFPSQAPRSSVDGPPLNLEDRITAASHANMPTSR
RHPSNFGVQNGALLEYQSSEHTLNHGRTATMQAPPWQQPTGLPLRVQAPEHPSVLDRIPL
PADGEMPVKRLEIGGIYNALSADIPLVEKHRPLTAAAPIEWPPLHHTQSQTLVPIPPDTK
HVRNAADSLEIRPFVSQGASSSVFVPRHQYDALDRKTLSTGSLAQPPYQHQDLLPSSQQN
QGAVLGNQAQPHHPQQFHPHSHPHHQEAFRGFGPGMSISPFPGQGGSAALPPVSLLPSSF
SGPPAVPPYGMPSVSSFPRPPLPPGPPPGSLQIGSSSSQVGGPQPFVSGLLSNLMRQGVI
TLGPHSQPQDSIGVDFNIDLKVRNDSVINALYQDLSRQCKTCGLRFKCQEEHRAHMDWHV
TKNRNSKNRKQSSRKYFVTAEEWLRAAETVGNDGVPAFVPSDPVPDSKEEKEMAVPADEE
QTACALCHEPFEDFYSDETEEWMYKGAVYMNAPDGNIDGLERSQLGPIVHAKCRSGPSST
S
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcccccgcggcgggccaggtcgtggagcggttccgcgcgcggctgcgcgag
gaggcgggcggcgccgggggcgagccgggcgccgccgcggtggtgcgcgtgtacgcggag
gcgctccgggagctcaccttcaactgcaagccggtcatcaccgagctcaccatcatcgcg
gggcagcacgccgcgctcgccgccaggggcatcgccgacgccgtctgcgcccgcgtcgcc
gaggtgccacctgaccagatattaccatctttgtatctgctagatagtattgtgaagaac
atagggcgcgaatatgtagaccgttttgccgcaaggttgcagaaggtatttgttgatgca
tactgtagagttcatcccagccagtatgcttcaatgcggcgcctctttcgtacctggtgg
ccagtgtttccttcttctgtgcttcgtggcatcgaggacgaccttcaattttctccctca
caggaaaagcgtcctgccatagcgacaaatccacatcaatcagagtctctatctcctagg
ccctctcatggcatacatgtaaatcccaagtatctggaagcacaacaaaaattgaagcag
gccaatgtgatgcatcagcctgccgttcgtggcactaggcaaatggctgatgtggaggag
gatctgataaatggattaacatcgaacggcttgcgaggacgtccttcaatgtttcagaaa
tctactgtgcagtatgctgatgatcctgatcaacaagatacactccgatctcttgctgga
acaataagggcaacatcaccacatctgttgagtgcacatccatctgatgccattctagat
gggccattagacacttcaaggagaaacctgtccaggtcgccacctcttgatgtgttccct
aggaatgcgtcccccaagagagtgctagagaggctaccaccatctcgttctatattggga
cctgatcccagaagattgcctgatcggaatggcaggtcgagatggaccttcgacgatggt
gcacggcggcctacaatcagcatgcttgatgaagagtacaggaagcaaagtgcaagagaa
cttattgacgcttatgggaattctcaaggccgagatgctgatgaaagagtttctaaaatg
cagcgcctggattcaaatgggatggctagtgcacgaaattggctcacttcagaggaagaa
gagtattcttgggaggacatgagtccaactttgactgatcgaatcagaagcagcgtgcca
tcatttcctcctggaaccatgagagctggatttcctggggcaaaagcagggttactggaa
tctgatattgggaggcacaattttccaagccaagctcctcgatcatcggttgatggccca
ccattaaatcttgaagataggattactgctgcaagtcatgctaacatgcctactagtagg
agacatcctagcaattttggtgttcagaatggagctcttttggagtaccagagttctgag
cataccctcaatcatgggagaactgctaccatgcaagctccaccttggcagcagcctact
ggtctgccattacgagtacaagcacctgaacatccatcagtacttgatagaataccactg
cctgctgacggtgaaatgccagtcaagagactagagatcggtggtatatacaatgctttg
agtgcagatatacctttggtggagaagcacaggccgttaactgctgctgccccaatagaa
tggcctcctcttcatcatactcagtcgcaaactttagtaccaattccacctgatacaaaa
catgttagaaatgcagcagatagtctagaaattaggccatttgttagtcaaggagccagt
tcatctgtatttgttccacggcatcaatatgatgccttggatcggaaaacactaagtacc
ggtagcttagctcaaccaccatatcagcaccaagatttgttgccatcaagtcaacagaat
caaggtgcagttttgggaaaccaagcacagcctcatcatcctcaacagtttcatccccat
tcccatccccaccatcaggaggcttttagaggctttggcccgggcatgtctatatccccg
ttcccaggacaagggggtagtgcagcattgccaccagtttcacttctgcccagctctttt
tctggtccacctgctgtgccaccatatggcatgccgtctgtgtccagttttcctaggcca
ccactacctcccggaccgccacctggttcgctgcagattggttcatcatcatcacaagtt
ggtggccctcaaccatttgtgtctggactattgagtaaccttatgcggcaaggtgtaatt
acattgggaccacatagccaacctcaggactcaattggagttgacttcaatatagacctc
aaggtacggaatgattctgtcatcaatgctttgtatcaggatctttcaagacagtgcaaa
acttgtggccttcggttcaaatgccaagaggagcatcgtgctcacatggactggcatgtt
acaaaaaacagaaattcaaagaaccgtaagcaatcttcacgtaaatattttgtcactgcg
gaggaatggttaagagcagcagaaacagttggaaacgatggggttcccgcttttgtgccc
tcagacccagtcccagacagcaaggaagagaaagaaatggctgttcctgcggatgaggag
cagacagcttgtgcattatgtcatgaaccatttgaagatttctacagtgatgagactgaa
gagtggatgtacaaaggtgcagtttacatgaatgcaccagatggtaatattgatggtttg
gaaaggtcacagttgggacctattgtccatgctaaatgtcgatctgggcccagcagtact
tcttag
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integrated database retrieval system
