Setaria italica (foxtail millet): 101756757
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Entry
101756757 CDS
T02818
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03013
Nucleocytoplasmic transport
sita03015
mRNA surveillance pathway
sita03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101756757
09122 Translation
03013 Nucleocytoplasmic transport
101756757
03015 mRNA surveillance pathway
101756757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101756757
03041 Spliceosome [BR:
sita03041
]
101756757
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101756757
Spliceosome [BR:
sita03041
]
Complex C
Other components
EJC/TREX
101756757
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
DUF3232
Motif
Other DBs
NCBI-GeneID:
101756757
NCBI-ProteinID:
XP_004984198
UniProt:
K4A6D5
LinkDB
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Position
IX:44143685..44148700
Genome browser
AA seq
723 aa
AA seq
DB search
MSSYPVLNNRPIDQWRVTDLKDELRKRRLPVKGLKEELVRRLFESIQSETAADEASEDVE
ANADDQLPDANASEETTVTITEVRQESVVHVTQQVEVPTTEVSQEFTISATGGTPSIDVE
ASLNEASAAKGEVPDSIVGGNLAFEEVQLHTESNNEPVLEKTSDVETNEAVIVNDVSTDV
KSDLATSEVKSDATKASKIQEQDSAPAPVDAITSDAGPMDTDVVTAAPVSDDGEKLAPKD
DLGDKVSMYDEEHKDSDTMNEDCEPIVSKPNNQVPEVSPDLGSQIKCESISSDLSTNKKN
NIEDNLNANNFDLELEVKPKMVEPSSGITPLGGDLQPLDDDKELVKDQSSVEDIDSTANE
DSYKKDSPEGSPEKLNLDRSSGDESMEEDVMEIKQVELNMKSDDLRGKTELNSEDVKSVT
LPDSVVEASSVDTKEVIAEEKSAASTEKRKLEAEEVVANTEPIKRQRRWTADGAKVPERQ
TLDQTGSDAPKDVFQPALKRSFGRSDSTASVDSPKERIVPPSQKPATTSLRIDRFVRPFT
LKAVQELLGKTGSVQNFWMDHIKTHCYVTFSSVDEAVATRDAVYNLQWPPNNGNKLIAEF
VDPQEVKLKIEPPPPPAAPVSPAAAARAPPVQQAQANQNVPRQAATPKEQLPPPPPLAKP
PTADPVASARERLPPTPKKPEPPVVTLDDLFRKTQSSPRIYYLPLSEEEVAAKLAAQGKG
KKE
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatatcctgtgctaaacaaccgtcctattgatcagtggagagttactgatctg
aaggatgaactccgtaaaaggaggcttcctgtcaagggtttgaaagaagaacttgtgagg
cgactctttgaatccattcagagtgaaacagcagctgacgaagcttctgaagatgtggaa
gcaaacgcagatgatcagttgcctgatgccaatgctagtgaggaaactacagttaccatt
acagaagttcgtcaggaatctgtggttcatgtcactcagcaagttgaagttcctaccacc
gaagttagtcaggaattcacaatttctgccactggagggacccccagtatcgatgttgaa
gcttccttaaatgaggcctctgctgccaaaggagaagtacctgattccattgttggagga
aatttagcatttgaagaagtgcaactgcatactgaaagtaataatgagcctgttcttgag
aagacctcagatgtagagactaatgaggcagtcattgtcaatgatgtcagtactgatgtg
aagtcagacttggccacttctgaagtcaagtctgatgccactaaagcaagcaaaattcaa
gaacaggattcagcaccagcacctgttgatgccatcacttcagatgctggtcctatggat
accgatgttgtcacagctgcaccagtaagtgatgatggggagaaactggcacccaaggat
gatttgggtgacaaagtgtcaatgtatgatgaagagcacaaagattctgataccatgaac
gaggactgcgagcccatcgtgtcaaaaccaaataatcaggtacctgaggttagcccagat
ttagggtctcaaattaagtgtgagtcgatttctagtgatctatcaactaataaaaagaat
aatatagaagataacttgaatgctaataattttgatttagaactagaggttaagccgaag
atggtcgaaccatcatccggcattactcccttaggtggagatttgcagccattggatgat
gacaaagagctggttaaggaccagtcatctgtggaagacatagattccaccgctaatgag
gactcatacaagaaagatagtcctgaaggttctccagagaaattaaatttagacaggagt
tcaggtgatgagtcaatggaggaggatgttatggaaattaaacaagttgagttgaatatg
aagtctgatgatctcagaggaaagaccgagcttaactcagaagatgtgaaatcggtgacc
ctccctgattctgttgttgaggcttcctctgttgataccaaggaggttatagctgaagaa
aagtcagcagcttcaacagaaaagaggaaacttgaagctgaagaggttgttgcaaacacc
gaaccaatcaagcggcagcgccggtggactgcagacggtgccaaagttccagagagacaa
acattggatcaaactggttctgatgctcccaaggatgtttttcagcctgctcttaaacgc
tcttttgggaggtccgattcaacagctagtgtagattctcctaaggagcggattgtgcca
ccgtctcagaaacctgcaacaacttctttgagaattgatcgatttgtacgcccatttact
ctgaaagctgtgcaggagcttcttggtaaaactggatcagtacaaaacttctggatggat
catatcaagactcattgctatgttacgttttcctcggttgatgaagctgttgctaccagg
gatgctgtttacaacctacagtggcccccaaacaatggcaataagttgattgctgaattt
gttgaccctcaggaagtgaagctcaagattgaaccccctcccccaccagctgctcctgtt
agcccagctgccgccgcaagggcgcctcctgttcaacaggctcaggctaatcaaaatgtg
ccgcgccaagctgctacaccgaaggagcaactgccacccccaccgccccttgctaagccc
cctactgctgacccagtagcatcagcaagggagaggcttccgcccactccaaagaagccg
gagcctcctgttgtgacgcttgatgatctcttcaggaagacacagtcgtccccgaggatc
tactatctgcctttgtcagaagaggaggtggcagccaagctcgccgcacaaggcaaaggg
aaaaaggaatag
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