Setaria italica (foxtail millet): 101756777
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Entry
101756777 CDS
T02818
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03015
mRNA surveillance pathway
sita03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101756777
09123 Folding, sorting and degradation
03018 RNA degradation
101756777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101756777
03041 Spliceosome [BR:
sita03041
]
101756777
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101756777
mRNA cycle factors
Stress granule specific factors
101756777
Spliceosome [BR:
sita03041
]
Complex C
Other components
Complex C specific factors
101756777
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_MUD2_C
RRM_5
RBD_DEAH11
RRM_occluded
RRM_RdRP1_2
RRM_10
RRM_11
Fin
TC1
Motif
Other DBs
NCBI-GeneID:
101756777
NCBI-ProteinID:
XP_004987062
UniProt:
A0A368SSJ1
LinkDB
All DBs
Position
IX:complement(49843382..49848115)
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AA seq
661 aa
AA seq
DB search
MPASEMEAAAASAHAPAGAADQQQEAESAPAPAVQPGSEEAQPAAAAVPALYVGDLHEDV
GEDHLFDAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVTALEKLNHSLVLDKPI
RVMWSNRDPDARRSGVGNIFVKNLNDFVDNARLQELFSKFGDVLSCKVAKNEDGTTRGYG
FVQFASQESADAAIENLHGSLFNDRKLHVATFVKKSERSANNDDKFTNLYMKHLDDDITE
ELVKLKFSQFGPIVSVKIMRRPDGSSLGFGFVSFQNPESAIKAQETMHGMPIGSKALYVA
RAQKKEERKQYLQRLHEEKRNEIINKSNESNVYIKNIHDEVDDEALRARFDEFGNITSAK
VMRDDKGISRGFGFVCFSTPEEAKGAVSSMRGVMFYGKPLYVAIFQRKEERRAKLQQHFA
QLATMVGPANSMIPTGYPHVYFAHPNTHLPQGPPRHGFVYPPMGLSHEWRPNMFPSPPNI
PQIHSPMMPNSPRHYRSNRGRMGGNMMPLPHTVHAVNYVAHAPPAKDFMSMPRQRFSHPK
YFSNDVMANGLAIHHGDPVLSENDSSSTYLASAPPGEQKKLLGNRLFPLVERHQPRLARK
ITGMLLELDSSEVVTLLCSSEMLSTKVDECMQLLHATNPKAEDQEPLHPGFMLDSAGVNA
N
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgccggcgtcggagatggaagcggctgctgcgtccgcgcacgcgccggcgggggccgct
gatcagcagcaggaggcagaatcggcgcccgctcccgcggtgcagccggggagtgaggag
gcgcagccggctgcggcggcggtgccggcgctgtacgtgggcgatttgcacgaggacgtg
ggggaggatcacctgttcgacgccttcagcaagatcggcaccgtcacgtccgtgcgtgtc
tgccgcgacaacgccaccagcagatcgcttagatatggatacgtgaactacttctctcgg
gctgacgctgtgactgctcttgaaaaattgaaccatagcttggttttggataagccgata
agggtgatgtggtcgaaccgggatccagatgctaggagaagtggtgtcggtaacatattt
gttaagaaccttaatgattttgtggacaatgccaggcttcaagaattgttctctaagttt
ggagatgttttatcatgtaaagttgccaaaaatgaagatgggactactagaggctatggg
ttcgttcaatttgcctcacaagaatcagcagatgcagcaattgagaacctccatggctct
cttttcaatgacaggaaattgcatgttgctacttttgtcaagaaaagtgaacgatctgca
aataatgatgataaatttactaacctatatatgaagcatctggatgatgacataacagag
gaacttgtaaaattgaagttctctcagtttggtccgatagttagtgtgaaaattatgagg
agacctgatgggtcatctctgggatttgggtttgtcagcttccaaaaccctgaaagtgcc
attaaagcacaagagaccatgcatgggatgccaattggatcaaaagctttgtatgtggca
agagctcaaaagaaggaggaaaggaaacaatatttgcagcgcttacatgaggagaaaaga
aatgaaataataaataagagcaatgaatcaaatgtttatataaaaaacattcatgatgaa
gtcgatgatgaagctcttcgcgcacgttttgatgaatttggtaacatcacatctgcgaag
gttatgcgtgatgataagggcattagtagaggcttcgggtttgtatgttttagtacacct
gaggaagcaaagggtgccgtaagcagcatgcgtggtgtcatgttttatggaaaaccatta
tatgttgctatttttcaaaggaaagaggagaggcgagccaaactgcagcaacactttgct
cagcttgctacaatggttggacctgcaaactctatgattcccactggatatccacacgta
tactttgcccatccaaatacacatctccctcaaggtcctccaagacatggatttgtgtat
ccacccatggggctcagtcatgaatggaggccaaatatgtttccttcaccacctaatatc
ccacaaatacattcacccatgatgccaaattcgccaaggcattatagaagcaacagggga
aggatgggtggaaatatgatgcctcttccccataccgttcatgctgtaaactatgtcgca
catgcgccaccagctaaagatttcatgtctatgccccgacagagattcagccatccaaag
tacttctccaatgatgttatggccaacggtttggccattcatcacggtgaccctgttttg
tcggagaatgattcttccagcacctatctggcttctgctccacccggggaacagaagaag
ttgctcgggaacaggctctttccgctcgttgagagacaccagcctcgactcgctcgcaaa
atcaccgggatgctgctggagctggacagctctgaggtggtgacgctgctttgctcgtcg
gagatgctgtcgaccaaagtcgacgagtgcatgcagctgctccatgcaacaaatcccaag
gccgaggatcaggagccgctacacccgggcttcatgctggactccgctggtgtaaacgcc
aattga
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