Setaria italica (foxtail millet): 101756843
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Entry
101756843 CDS
T02818
Name
(RefSeq) aladin
KO
K14320
aladin
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101756843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101756843
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101756843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ANAPC4_WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40
eIF2A
WD40_Prp19
WD40_MABP1-WDR62_1st
DUF7165
Motif
Other DBs
NCBI-GeneID:
101756843
NCBI-ProteinID:
XP_012703844
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Position
VIII:244756..252639
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AA seq
437 aa
AA seq
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MPSFPPPGAVTVCEINRDLVAADALSDDRAKEAYGDVLGMVFSPIPFQPDALPHIREAPA
AEQTESNENVPAASATSSISEFFKRMIFPPQGPNLLQEFDTQKISWNPHKHCLAFVSGKN
QVTVHDFEDSDAKEPCILTSDHVKAIEWRPNSGKMIAVACKGGICLWSASYPGNAPFMKA
GVTSSSLSAFRSGDQWILVDVLRDSSAEQVSALCWKPDGRYLASASCNSPSFTIWDVSQG
LGTPIRRGLSNISLLRWSPSGDYLLAAKFDGTFHFWETNTWTSEPWSSSNGYVSGANWDP
EGRVALLSFSNSTTLGSIHFSSKPPSLDAHLLPVELPEISSLIVSRGIEKLAWDASGERL
ALSFKDGNEMYRGLLAVYDVRRSPLVSLSLVGFIRGPGEGAKPLAFAFHSKFKQGPLLSV
CWSSGWCCTYPLILHSH
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgccgagcttccctcctcccggcgccgtcactgtctgcgagatcaaccgcgacctagtt
gcggcagatgccttgtccgacgaccgcgccaaggaagcatacggggatgtccttggaatg
gtcttcagccccatccctttccagccagacgctcttccccacatccgcgaggcccctgct
gctgagcaaactgagtccaatgagaatgtacccgcagctagtgcgacttcctccatatca
gagttcttcaaacggatgatcttccctccacaaggaccaaatctgctacaagaatttgac
acccagaaaataagttggaatccgcacaagcattgtctagcatttgtgtctgggaagaac
caggttacagtacatgactttgaggattcagatgctaaagagccgtgcattttgacaagt
gaccatgttaaggcaattgagtggagaccaaatagtggcaagatgattgcagttgcctgc
aagggagggatatgcctctggtcagcatcgtatcctggcaatgctccattcatgaaagct
ggggtcacctcttcttcccttagtgcctttcgttctggtgatcagtggatactggtggat
gttcttcgtgattcttctgctgagcaagttagtgcactttgttggaagcctgatggaaga
tacttggcatctgcctcctgcaatagtccatcttttacaatttgggatgtttctcaaggg
ttgggtactcctatacggcgtggattaagtaatatatcactactgcggtggtcacctagt
ggagattaccttctagctgctaaattcgatggaacttttcacttctgggagacaaacaca
tggacttcagaaccttggtcttcatctaatggatatgtgtctggagcgaattgggatcca
gaaggtcgtgttgcattgttatccttttctaactcaacaacacttggctcaattcacttt
tcatctaagccaccatctttagatgcccatctcctaccggttgaacttccagaaatttcc
tccctgattgtaagccgaggcatagagaaattagcatgggatgcttcaggggagcgtctg
gcattgtcgttcaaagatggaaatgaaatgtaccgtggccttcttgctgtatatgacgtg
aggagatctccacttgtctcactatcactagtcggattcattagaggacctggagaagga
gcaaaaccacttgcttttgcttttcatagcaaatttaagcaaggacccttgctttctgtg
tgctggagcagcggctggtgctgtacatatccactgatacttcattcccattaa
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